hsa ----------------------------------------------------------------------------------------------------------------------------                      
ptr ----------------------------------------------------------------------------------------------------------------------------                      
ggo ----------CCGCCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAG----UCUAUGGCUCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGCGGG miRbase              
ppy ----------CCGCCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAG----UCUAUGGCCCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGCGGG miRbase UCSC ENSEMBL 6_qbl_hap2:1044940-1045049(+)
mml ----------------------------------------------------------------------------------------------------------------------------                      
cja ----------------------------------------------------------------------------------------------------------------------------                      
tsy ----------------------------------------------------------------------------------------------------------------------------                      
mmr ----------------------------------------------------------------------------------------------------------------------------                      
oga ----------------------------------------------------------------------------------------------------------------------------                      
tbe ----------------------------------------------------------------------------------------------------------------------------                      
cpo ----------------------------------------------------------------------------------------------------------------------------                      
dor ----------------------------------------------------------------------------------------------------------------------------                      
mmu ----------------------------------------------------------------------------------------------------------------------------                      
rno ----------------------------------------------------------------------------------------------------------------------------                      
str ----------------------------------------------------------------------------------------------------------------------------                      
opr ----------------------------------------------------------------------------------------------------------------------------                      
ocu ----------------------------------------------------------------------------------------------------------------------------                      
bta ----------------------------------------------------------------------------------------------------------------------------                      
ttr ----------------------------------------------------------------------------------------------------------------------------                      
vpa ----------------------------------------------------------------------------------------------------------------------------                      
ssc ----------------------------------------------------------------------------------------------------------------------------                      
cfa ----------------------------------------------------------------------------------------------------------------------------                      
fca ----------------------------------------------------------------------------------------------------------------------------                      
eca -----------------GGGCCGCGGCUCUUGAUUGUCCAAACGCAAUUCUCGAG----UCUCUGGCUCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCC---------------- miRbase UCSC ENSEMBL 20:33649525-33649611(+)
mlu ----------------------------------------------------------------------------------------------------------------------------                      
pva ----------------------------------------------------------------------------------------------------------------------------                      
eeu ----------------------------------------------------------------------------------------------------------------------------                      
sar ----------------------------------------------------------------------------------------------------------------------------                      
cho ----------------------------------------------------------------------------------------------------------------------------                      
dno ----------------------------------------------------------------------------------------------------------------------------                      
ete ----------------------------------------------------------------------------------------------------------------------------                      
laf ----------------------------------------------------------------------------------------------------------------------------                      
pca ----------------------------------------------------------------------------------------------------------------------------                      
meu ----------------------------------------------------------------------------------------------------------------------------                      
mdo ---------------CAGGGGUUCCGCCGCUGAUUGUCCAAACGCAAUUCUUGUGCGAGUCUGCAG--CCAACCGAGAAUUGUGGCUGGACAUCUGUGGCUGAGCUCC---------------- miRbase UCSC ENSEMBL 1:454138610-454138700(-)
oan GGCCCAACCGAGCCAGCGGGGCCCCGCCGCUGAUUGUCCAAACGCAAUUCUUGUGCGAGUUUGCGG--CCAACCGAGAAUUGUGACUGGACAUCUGUGGCUGGGCUCCCGGCGCGACGCGGGCC miRbase UCSC ENSEMBL Contig12675:21656-21777(-)
gga ---------------------CUCUGCUCCUGAUUGUCCAAACGCAAUUCUUGUGCGCUGGAGCCGUACGAACCAAGAAUUGUGUCUGGACAUCUGUAGCAGAGAU------------------ miRbase UCSC ENSEMBL 17:5577817-5577901(+)
tgu --------------------UCUCCGCUCCUGAUUGUCCAAACGCAAUUCUUGUGCGAUGGAGCCGUACGAACCAAGAAUUGUGUCUGGACA-------------------------------- miRbase      ENSEMBL 17:5454954-5455025(+)
aca ----------------------------CCUGAUUGUCCAAACGCAAUUCUUGUC----UCC---GCUCCA-CCGAGAGUUGAGUCUGGACAUCAGGAGCCGGAGG------------------         UCSC ENSEMBL scaffold_1372:63517-63587(-)
xtr --------------AUGGAGCUCUCGCCCUUGAUUGUCCAAACGCAAUUCUUGUUCCAAUAGAAAUAUCAAGCCAAGAAUUGUGCCUGGACAUCUGUGGCUGGUGAUCC--------------- miRbase UCSC ENSEMBL scaffold_1845:25832-25926(+)
dre ----------------------------------------------------------------------------------------------------------------------------                      
gac ----------------------------------------------------------------------------------------------------------------------------                      
ola ------------------------------UGAUUGUCCAAACGCAAUUCUUGUG--GUCCGUCUA---GAUCCAGGAGUUGUGGAUGGACAUC-AUGCCCCCA--------------------         UCSC ENSEMBL 16:12600027-12600095(-)
tru ----------------------------------------------------------------------------------------------------------------------------                      
tni ----------------------------GUUGAUUGUCCAAACGCAAUUCUUGUGUGAUUUCUCCA---UAUUCAGGAGUUGUGGAUGGACAUC-AUGCC------------------------         UCSC ENSEMBL 8:6475925-6475993(-)
                                  ********************* *                    *  ** *** *  *****                                 
                                  ********************* *                   **  ** *** *  ***** **     *                        
                                  ********************* * *             *   ** *** *** * ****** **     *                        
                             **   *************************    *     *  * * ** *** *** * *********    ** *                      
                           * ** ***************************    *     *  * * ** *** ***** *********    ** *                      
                     * * * * ** ***************************    **  * *  *** **********************  * ** *     *                
                     *** * * ********************************* *** * *  *** ********************** *******  * **                
                     ***** ******************************************************************************** * ***               
                 * **********************************************************************************************    *  ** * *  
              ******************************************************************************************************************
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