hsa ------------------------------CUCGGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- miRbase UCSC ENSEMBL 18:33484781-33484889(-)
ptr --------------------------------------------------------------------------------------------------------------------------------------
ggo GGUCGGGCUCACCAUGACACAGUGUGAGACCUCGGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGACGCAGGUCCGCA--------------------- miRbase
ppy ------------------------------CUCGGGCUACAACAUAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- miRbase
mml ------------------------------CUCGGGCUACAACACAGGACCCGGGUGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- miRbase UCSC ENSEMBL 18:28861007-28861115(-)
cja ------------------------------CUCGGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL Contig18:15643048-15643116(-)
tsy -------------------------------UCAGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGG-------------------------------------- ENSEMBL scaffold_93352:9263-9324(+)
mmr ------------------------------CUCGGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL GeneScaffold_2696:370715-370783(-)
oga --------------------------------------------------------------------------------------------------------------------------------------
tbe --------------------------------------------------------------------------------------------------------------------------------------
cpo ------------------------------CUUGGGCUACAACACAGGACCCGGGCGCUG-AUUUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- UCSC ENSEMBL scaffold_14:28433761-28433829(+)
dor --------------------------------UCGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGACAC------------------------------ ENSEMBL scaffold_17492:14265-14333(+)
mmu -----GGGCUCACAGGAUACAAUGCGGGUCCUCAGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGACGCAGGUCUGCA--------------------- miRbase UCSC ENSEMBL 18:24587611-24587671(-)
rno -------------------------------UCAGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGG-------------------------------------- miRbase UCSC ENSEMBL 18:16219576-16219679(-)
str ----------------------------------GGCUACAACACAGGACCCGGGCGCUG-UUCAGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGACACAG---------------------------- ENSEMBL GeneScaffold_2886:341532-341600(-)
opr ------------------------------CUCGGGCUACAACCCAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL scaffold_992:157341-157409(-)
ocu ------------------------------CUCGGGCUACAACACAGGACCCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL scaffold_188662:3733-3801(+)
bta ------------------------------CUCGGGCUACAACACGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- miRbase UCSC ENSEMBL 24:22320849-22320957(+)
ttr ------------------------------CUCCGGCUACAACAUGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL scaffold_92276:66462-66530(+)
vpa --------------------------------------------------------------------------------------------------------------------------------------
ssc ------------------------------CUCGGGCUACAACACGGGACUCGGGCGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL 6:83322559-83322627(-)
cfa ------------------------------CUCGGGCUACAACACGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- miRbase UCSC ENSEMBL 7:57243104-57243171(+)
fca ------------------------------CUCGGGCUACAACACGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL GeneScaffold_2438:3250-3318(-)
eca ------------------------------CUCGGGCUACAACACGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- miRbase UCSC ENSEMBL 8:56143025-56143085(-)
mlu ------------------------------CUCGGGCUACAACACGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL GeneScaffold_2930:29380-29448(-)
pva --------------------------------CGGGCUACAACACGGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGACGCAGGUCCGCAGCAGAGCCCACCCCGCCGCCC ENSEMBL GeneScaffold_1884:83779-83877(-)
eeu --------------------------------------------------------------------------------------------------------------------------------------
sar ------------------------------CUCGGGCUACAACACGGGACCCGGGCGCUA-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL GeneScaffold_3643:217494-217562(-)
cho ------------------------------CUCGGGCUACAACACAGGACCCGGGCGCUG-CUCCGACCCC---UCGUGUCUUGUGUUGCAGCCGGAGGGAC-------------------------------- ENSEMBL scaffold_462687:486-554(-)
dno --------------------------------------------------------------------------------------------------------------------------------------
ete --------------------------------------------------------------------------------------------------------------------------------------
laf ------------------------------CUCGGGCUACAACACAGGACCCGGGUGCUG-CUCUGACCCC---UCGUGUCUUGUGUUGCAGCCGGGGGGAC-------------------------------- ENSEMBL GeneScaffold_3430:64871-64939(-)
pca --------------------------------------------------------------------------------------------------------------------------------------
meu --------------------------------CUGGCUACAACACAGGACAUGGGAGCUU-UUCUGAACCC---UCGUGUCUUGUGUUGCAGCCAGAGGGGCAC------------------------------ ENSEMBL Scaffold13919:16909-16977(-)
mdo --------------------------------CUGGCUACAACACAGGACACGGGAGCUU-UUCUGAACCC---UCGUGUCUUGUGUUGCAGCCAGAGGGGCAC------------------------------ miRbase UCSC ENSEMBL 3:87606200-87606280(+)
oan ----------------------------------GGCUACAACAGAGGACACAGGAGCUU-UUCAGAACCC---UCGUGUCUUGUGUUGCAGCCAGAGGAGCACAU---------------------------- miRbase UCSC ENSEMBL X3:5316985-5317063(+)
gga ------------------------------CUCCGGCUACAACACAGGACAUGGGAGCUU-UUCUGAACCC---UCGUGUCUUGUGUUGCAGCCAGAGGGGC-------------------------------- miRbase UCSC ENSEMBL 2:85892470-85892555(+)
tgu --------------------------------------------------------------------------------------------------------------------------------------
aca ---------------------UUGUGAGACCUUUGGCUACAACACAGAACAUGGGCGCUUUCUUGGA-CCC---UCGUGUCUUGUGUUGCAGCCAGAGGGGCACA----------------------------- UCSC ENSEMBL scaffold_452:410974-411054(+)
xtr ---------------------------------UGGUUACAACACAGGACAUGGGAGCUUACUUGGAACCC---UCGUGUCUUGUGUUGCAGCCAGUGGUGGCC------------------------------ miRbase UCSC ENSEMBL scaffold_756:303898-303979(+)
dre -----------------------------------GCUGCAACACAGGACAUGGGAGCUGUCUCUCACUCCCGCUCGUGUCUUGUGUUGCAGCCAGUGGAACGG------------------------------ miRbase UCSC ENSEMBL 19:33277157-33277245(+)
gac --------------------------------------------------------------------------------------------------------------------------------------
ola ---------------------------------CGGCUGCAACACAGGACAUGGGUCCUGCUUCUCCUCCCCGCUCGUGUCUUGUGUUGCAGCCAGUGGAGC-------------------------------- UCSC ENSEMBL 11:7840476-7840545(+)
tru ----------------------------------GGCUGCAACACAGGACAUGGGUCAUGCCUCUGCCCACCGCUCGUGUCUUGUGUUGCAGCCAGUGGAGCU------------------------------- UCSC ENSEMBL scaffold_45:756102-756171(-)
tni ---------------------------------GGGCUGCAACACAGGACAUGGGUCUUGCCUCUGCCCGCCGCUCGUGUCUUGUGUUGCAGCCAGUGGAAC-------------------------------- miRbase UCSC ENSEMBL 21:1019288-1019352(-)
* * **** * ** ** * * * ******************** *
**** ***** **** *** * * * * ******************** *
**** ***** **** *** ** * * *** ******************** * **
**** ****** **** *** *** ** ** *** ******************** * ** *
*********** **** *** *** ** ** *** ******************** * ** *
*********** **** *** *** ** ** *** ******************** * ** *
*********** **** *** *** ** ** *** ******************** * ** *
*********** **** *** **** *** ****** ******************** * ** *
*********** **** **** **** *** ****** ******************** ***** *
**************** **** **** *** ****** ******************** ***** *
* **************** **** **** *** ****** ****************************
** ************************** *** ****** ****************************
** ************************** *** ****** ****************************
*** ************************** ********** ****************************
*** ************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** ****************************
****************************** ********** **************************** *
****************************** ********** **************************** *
****************************** ********** **************************** *
****************************** ********** **************************** *
****************************** ********** *******************************
****************************** ********** *******************************
****************************** *********************************************
** * * ******************************************************************************** ***
** ** ** *** *******************************************************************************************
**************************************************************************************************************************************