Affiliated Research Tools

• partiFold TMB
• IBM BlueMatter
• AEGIS
• MINIMALIST

Academic Projects at MIT

• The Trigger Factor Chaperone [with Mieszko Lis], The Protein Folding Problem course research report (7.88). [pdf] [slides]
• Learning Hidden Instruction Sequences using Support Vector Machine Classification, Machine Learning course project (6.867). [pdf]
• Information Leak in the Chord Lookup Protocol [with Vinod Vaikuntanathan], Computer Networks course project (6.829). [pdf] [slides pdf]

Academic Projects at Columbia

• The OGEL Programming Langauge [with M. Ching, G. Flores, M. Kalish], Programmging Languages course project (CS4115). [pdf] [slides (pdf)] [compiler]
• NETCOM P2P Architecture [with N. Brand, E. Poirier, T. Flores, O. Siddiqui, M. Litvin], Software Engineering course project (CS3156). [pdf] [source javadoc HTML]
• 8-bit CPU Core [with Lessing Luu], VLSI course project (EE4321). [Layout Image (my first)]
• PDP-8 System (FPGA-based with UART/MEM/IO/UI) [with David Zawistowski], Computer Hardware Design course project (EE4340). [board] [microcode instruction run (pdf)]
• Early Computer Data Structures (CS3139) class projects
• Early Introduction to Computer Science (CS1007) class projects
• Early Computer Graphics Design (EE1102) class project