... growing link collection

Introduction and Overview of Medical Imaging Modalities

- Grays Anatomy: anatomical atlas link

1. -Public medical image datasets of various modalities link
   

Active Shape Models

- AAMIR project @ TUWien, TUGraz, MUWien, link

1. -Tim Cootes, everything ASMs, AAMs, model learning, ... link
   

- T. Cootes, C. Taylor, D. Cooper, and J. Graham. Training models of shape from sets of examples. In

Procceedings of BMVC’92, pages 266–275, 1992. pdf

Active Appearance Models

- T. Cootes. ASM / AAM Primer pdf

1. -T. Cootes. Extensive report on everything ASM/AAM pdf
   

Model Learning and Model Structure

- Tutorial on Learning Models of Anatomy and Function: G. Langs, D. Samaras, T. Cootes: link

- T.F. Cootes, C.J. Twining, V.Petrovic, R.Schestowitz and C.J. Taylor, Groupwise Construction of Appearance Models using Piece-wise Affine Deformations.  in Proc. British Machine Vision Conference,2005, vol. 2, pp.879-888 pdf

- G. Langs, R. Donner, P. Peloschek, and H. Bischof. Robust autonomous model learning from 2d and 3d

data sets. In Proc. of MICCAI’07, 2007. pdf

- G. Langs, N. Paragios.Modeling the Structure of Multivariate Manifolds: Shape Maps.  in Proc. of IEEE CVPR'08, 2008 pdf

Neuroimaging and Machine Learning

- Extensive general linear model (GLM) Literature: link

- Nancy Kanwisher (Fusiform face area): link

- James Haxby (Multi Voxel Pattern Analysis): link

- A.P. Holmes, J.B. Poline, and K.J. Friston. Characterizing brain images with the general linear model. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 59-84. Academic Press USA, 1997. pdf

- Kanwisher, N., McDermott, J., & Chun, M. (1997) The Fusiform Face Area: A Module in Human Extrastriate Cortex Specialized for the Perception of Faces. Journal of Neuroscience. 17 4302-4311 pdf

- Georg Langs, Dimitris Samaras, Nikos Paragios, Jean Honorio, Elly Alia-Klein, Dardo Tomasi, Nora D. Volkow, Rita Goldstein. Task-specific Functional Brain Geometry from Model Maps  in Proc. of MICCAI'08, 2008 pdf

Active Contours

- Nikos Paragios (Level sets and shape priors) link

- Chenyang Xu (Gradient Vector Flow) link

- Level-set MATLAB code link

- Daniel Cremers link

Graph Cuts

- Yuri Boykov: graph cuts link

Non-rigid Registration

- Daniel Rueckert: non-rigid registration link

- Ben Glocker link

- Center for medical image computing university college london (David Hawkes, Julia Schnabel, ...) link

Open source Software

- OsiriX: Mac DICOM viewer link

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