Matt Rasmussen
MIT CSAIL
32 Vassar Street, 32-G828
Cambridge, MA 02139
rasmus[at]mit[dot]edu
MIT CSAIL
32 Vassar Street, 32-G828
Cambridge, MA 02139
rasmus[at]mit[dot]edu
I am a Computer Science MIT graduate student working in CSAIL. My advisor is Manolis Kellis and I am a part of the Compbio lab. My research interest is in comparative genomics, specifically, on phylogenomic algorithms for accurately reconstructing gene trees.
I have a M.S. in Computer Science from MIT, and a B.S. in Math and Computer Science from the University of Minnesota [UofM page].
Publications
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Rasmussen, Kellis.
Accurate gene-tree reconstruction by learning gene- and species-specific
substitution rates across multiple complete genomes.
Genome Research. 2007 17: 1932-1942.
[doi]
[website]
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Stark*, Lin*, Kheradpour*, Pederson*, Parts, Carlson, Crosby,
Rasmussen, Roy, Deroas, Ruby, Brennecke,
FlyBase curators, Berkeley Drosophila Genome Project,
Hodges, Hinrichs, Caspi, Paten, Park, Han, Maeder, Polansky,
Robson, Aerts, vanHelden, Hassan, Gilbert, Eastman, Rice, Weir,
Hahn, Park, Dewey, Pachter, Kent, Haussler, Lai, Bartel, Hannon,
Kaufman, Eisen, Clark, Smith, Celniker, Gelbart, Kellis.
Discovery of functional elements in 12 Drosphila genomes
using evolutionary signatures.
Nature 450: 219-232. 2007.
[doi]
[website]
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Drosophila 12 Genomes Consortium.
Evolution of genes and genomes on the Drosophila phylogeny.
Nature 450: 203-218.
2007.
[doi]
- Lin, Deoras, Rasmussen, Kellis.
Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes.
PLoS Comput Biol. 2008 April; 4(4): e1000067
[doi]
Software
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Last Updated: Aug 12, 2008