Polina Golland

Contact:
MIT CSAIL
32 Vassar Street 32-D470
Cambridge, MA 02139
tel: 617-253-8005
email: polina at csail.mit.edu
Directions to my office

Assistant: Fern DeOliveira
32 Vassar Street 32-D429
Cambridge, MA 02139
tel: 617-253-5860
email: fern at csail.mit.edu

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Last updated
Oct 11, 2008

Publications

B.T.T. Yeo, M.R. Sabuncu, R. Desikan, B. Fischl, P. Golland. Effects of registration regularization and atlas sharpness on segmentation accuracy. Medical Image Analysis, 12(5):603-615, 2008.

W. Ou, M.S. Hamäläinen, and P. Golland. A Distributed Spatio-Temporal EEG/MEG Inverse Solver. Accepted to NeuroImage, 2008.

M.R. Sabuncu, S.K. Balci and P. Golland. Discovering Modes of an Image Population through Mixture Modeling. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

D. Lashkari, N. Kanwisher, and P. Golland. Discovering Structure in the Space of Activation Profiles in fMRI. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

B.T.T. Yeo, M.R. Sabuncu, T. Vercauteren, N. Ayache, B. Fischl and P. Golland. Spherical Demons: Fast Surface Registration. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

K. Van Leemput, A. Bakkour, T. Benner, G. Wiggins, L.L. Wald, J. Augustinack, B.C. Dickerson, P. Golland, and B. Fischl. Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

B.T.T. Yeo, P. Yu, E. Grant, B. Fischl, and P. Golland. Shape Analysis with Overcomplete Spherical Wavelets. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

W. Ou, M.S. Hamäläinen, and P. Golland. A Distributed Spatio-Temporal EEG/MEG Inverse Solver. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

S. Darkner, M.R. Sabuncu, P. Golland, R. Paulsen and R. Larsen. Analysis of Surfaces Using Constrained Regression Models. Accepted to MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.

S.K. Balci, M.R. Sabuncu, J. Yoo, S.S. Ghosh, S. Whitefield-Gabrieli, J.D.E Gabrieli and P. Golland. Prediction of Successful Memory Encoding from fMRI Data. Accepted to the MICCAI Workshop on Analysis of Functional Medical Images, 2008.

K. Van Leemput, A. Bakkour, T. Benner, G. Wiggins, L.L. Wald, J. Augustinack, B.C. Dickerson, P. Golland, and B. Fischl. Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI. Accepted to the MICCAI Workshop on the Computational Anatomy and Physiology of the Hippocampus, 2008.

B.T.T. Yeo, T. Vercauteren, P. Fillard, X. Pennec, P. Golland, N. Ayache, and O. Clatz. DTI registration with exact finite-strain differential. In Proceedings of ISBI: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 700 - 703, 2008.

B.T.T. Yeo, W. Ou and P. Golland. On the Construction of Invertible Filter Banks on the 2-Sphere. IEEE Transactions on Image Processing, 17(3):283-300, 2008.

Y. Golland, P. Golland, S. Bentin, R. Malach. Data-driven clustering reveals a fundamental subdivision of the human cortex into two global systems. Neuropsychologia, 46(2):540-553, 2008.

D. Lashkari and P. Golland. Convex Clustering with Exemplar-Based Models. Advances in Neural Information Processing Systems, 20:825-832, 2008.

 

P. Golland, Y. Golland, R. Malach. Detection of Spatial Activation Patterns As Unsupervised Segmentation of fMRI Data. In Proceedings of MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 4791:110-118, 2007.

W. Ou, P. Golland, and M. Hamalainen. Sources of Variability in MEG. In Proceedings of MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 4792:751-759, 2007.

B.T.T. Yeo, M.R. Sabuncu, R. Desikan, B. Fischl, P. Golland. Effects of Registration Regularization and Atlas Sharpness on Segmentation Accuracy. In Proceedings of MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 4791:683-691, 2007. MICCAI Young Scientist Award.

M.R. Sabuncu, M.E. Shenton, P. Golland. Joint Registration and Clustering of Images. In Proceedings of MICCAI 2007 Statistical Registration Workshop: Pair-wise and Group-wise Alignment and Atlas Formation, 47-54, 2007.

S.K. Balci, P. Golland, M.E. Shenton, W.M. Wells III. Free-Form B-spline Deformation Model for Groupwise Registration. In Proceedings of MICCAI 2007 Statistical Registration Workshop: Pair-wise and Group-wise Alignment and Atlas Formation, 23-30, 2007.

P. Yu, B.T.T. Yeo, P.E. Grant, B. Fischl, P. Golland. Cortical Folding Development Study based on Over-Complete Spherical Wavelets. In Proceedings of MMBIA: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 2007.

B.T.T. Yeo, M.R. Sabuncu, H. Mohlberg, K. Amuntsfferent, K. Zilles, P. Golland, B. Fischl. What Data to Co-register for Computing Atlases. In Proceedings of MMBIA: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 2007.

T.M. Ngo, C.-F. Westin and P. Golland. A White Matter Stochastic Tractography System. In Proceedings of MICCAI 2007 Workshop on Open-Source and Open-Data, 95-105, 2007.

S.K. Balci, P. Golland and W.M. Wells III. Non-rigid Groupwise Registration using B-Spline Deformation Model. In Proceedings of MICCAI 2007 Workshop on Open-Source and Open-Data, 106-122, 2007.

P. Yu, P.E. Grant, Y. Qi, X. Han, F. Segonne, R. Pienaar, E. Busa, J. Pacheco, N. Makris, R.L. Buckner, P. Golland, B. Fischl. Cortical Surface Shape Analysis Based on Spherical Wavelets. IEEE Transactions on Medical Imaigng, 26(4):582-597, 2007.

 

B.T.T. Yeo, W. Ou, P. Golland. Invertible Filter Banks on the 2-Sphere. In Proceedings of ICIP: International Conference in Image Processing, 2161-2164, 2006.

A.E. Carpenter, T.R. Jones, M.R. Lamprecht, C. Clarke, I.H. Kang, O. Friman, D.A. Guertin, J.H. Chang, R.A. Lindquist, J. Moffat, P. Golland and D.M. Sabatini. CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biology 7(10):R100, 2006.

P. Yu, X. Han, F. Segonne, A. K. Liu, R. A. Poldrack, P. Golland, and B. Fischl. Shape-based Discrimination and Classification of Cortical surface. In Proceedings of ICPR: International Conference on Pattern Recognition, 445-448, 2006.

T. R. Jones, A. E. Carpenter, D. M. Sabatini, P. Golland. Methods for High-Content, High-Throughput Image-Based Cell Screening. In Proceedings of the First MICCAI Workshop on Microscopic Image Analysis with Applications in Biology, 65-72, 2006.

P. Yu, X. Han, F. Segonne, R. L. Buckner, R. Pienaar, P. Golland, P. E. Grant and B. Fischl. Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. In Proceedings of MMBIA: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 60-67, 2006.

 

W. Ou, P. Golland. From Spatial Regularization to Anatomical Priors in fMRI Analysis. In Proceedings of IPMI: International Conference on Information Processing and Medical Imaging, LNCS 3565:88-100, 2005.

T.R. Jones, A. E. Carpenter, and P. Golland. Voronoi-based segmentation of cells on image manifolds. In Proceedings of ICCV Workshop on Computer Vision for Biomedical Image Applications, LNCS 3765:535-543, 2005.

P. Golland, F. Liang, S. Mukherjee, D. Panchenko. Permutation Tests for Classification. In Proceedings of COLT: Annual Conference on Learning Theory, LNCS 3559:501-515, 2005.

W.E.L. Grimson and P. Golland. Analyzing Anatomical Structures: Leveraging Multiple Sources of Knowledge. Invited paper. In Proceedings of ICCV Workshop on Computer Vision for Biomedical Image Applications, LNCS 3765:3-12, 2005.

P. Golland, W.E.L. Grimson, M.E. Shenton, R. Kikinis. Detection and Analysis of Statistical Differences in Anatomical Shape. Medical Image Analysis, 9(1):69-86, 2005.

 

P. Golland and B. Fischl. Permutation Tests for Classification: Towards Statistical Significance in Image-Based Studies. In Proceedings of IPMI: International Conference on Information Processing and Medical Imaging, LNCS 2732:330- 341, 2003.

 

P. Golland. Discriminative Direction for Kernel Classifiers. Proceedings of NIPS: Advances in Neural Information Processing Systems 14, 745-752, 2002.

P. Golland, B. Fischl, M. Spiridon, N. Kanwisher, R.L. Buckner, M.E. Shenton, R. Kikinis, A. Dale, W.E.L. Grimson. Discriminative Analysis for Image-Based Studies. In Proceedings of MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 2488:508-515, 2002.

S.J. Timoner, P. Golland, R. Kikinis, M.E. Shenton, W.E.L. Grimson, W.M. Wells. Performance issues in shape classification. In Proceedings of MICCAI: International Conference on Medical Image Computing and Computer Assisted Intervention, LNCS 2488:355-362, 2002.

M. Frumin, P. Golland, R. Kikinis, Y. Hirayasu, D.F. Salisbury, J. Hennen, C.C. Dickey, M. Anderson, I.A. Fischer, D. Yurgelun-Todd, F.A. Jolesz, W.E.L. Grimson, R.W. McCarley, M.E. Shenton. Shape Differences in the Corpus Callosum in First Psychotic Episode Schizophrenia and First Psychotic Episode Affective Disorder. American Journal of Psychiatry, 159:866-868, 2002.

 

P. Golland, W.E.L. Grimson, M.E. Shenton, R. Kikinis. Deformation Analysis for Shaped Based Classification. In Proceedings of IPMI: International Conference on Information Processing and Medical Imaging, LNCS 2082:517-530, 2001.

P. Golland, R. Kikinis, M. Halle, C. Umans, W.E.L. Grimson, M.E. Shenton, J.A. Richolt. AnatomyBrowser: A Novel Approach to Visualization and Integration of Medical Information. Invited paper. Yearbook of Medical Informatics 2001, Eds. R. Haux and C. Kulikowski, 414-428, Schattauer, Germany, 2001.

 

P. Golland and W.E.L. Grimson. Fixed Topology Skeletons. In Proceedings of CVPR: IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 10-17, 2000.

P. Golland, W.E.L. Grimson, M.E. Shenton, R. Kikinis. Small Sample Size Learning for Shape Analysis of Anatomical Structures. In Proceedings of MICCAI: Third International Conference on Medical Robotics, Imaging and Computer Assisted Intervention, LNCS 1935:72-82, 2000.

 

P. Golland, W.E.L. Grimson and R. Kikinis. Statistical Shape Analysis Using Fixed Topology Skeletons: Corpus Callosum Study. In Proceedings of IPMI: International Conference on Information Processing and Medical Imaging, LNCS 1613:382-387, 1999. Honorable Mention for the Best Poster Award.

P. Golland, R. Kikinis, M. Halle, C. Umans, W.E.L. Grimson, M.E. Shenton, J.A. Richolt. AnatomyBrowser: A Novel Approach to Visualization and Integration of Medical Information. Journal of Computer Assisted Surgery, 4:129-143, 1999.

R. Szeliski and P. Golland. Stereo Matching with Transparency and Matting. International Journal of Computer Vision, 32(1):45-61, 1999.

 

R. Szeliski and P. Golland. Stereo Matching with Transparency and Matting. In Proceedings of ICCV: IEEE International Conference On Computer Vision, 517- 524, 1998. Honorable Mention for Marr Prize.

P. Golland. R. Kikinis, C. Umans, M. Halle, M. Shenton, J. Richolt. AnatomyBrowser: A Framework for Integration of Medical Information. In Proceedings of MICCAI: International Conference on Medical Image Computing and Computer-Assisted Intervention, LNCS 1496:720-731, 1998.

J.E. Anderson, C. Umans, M. Halle, P. Golland, M. Jakab, R.W. McCarley, F.A. Jolesz, M.E. Shenton, R. Kikinis. Anatomy Browser: Java-based Interactive Teaching Tool for Learning Human Neuroanatomy. Electronic Journal of Radiological Society of North America, Vol 2, 1998.

G.S. Young, S.G. Silverman, J. Kettenbach, N. Hata, P. Golland, F.A.Jolesz, K.R. Loughlin, R. Kikinis. Three-dimensional Computed Tomography for Planning Urologic Surgery. The Urologic Clinics of North America, 25(1):103- 111, 1998.

 

P. Golland and A.M. Bruckstein. Motion from Color. CVIU: Computer Vision and Image Understanding, 68(3):346-362, 1997.

P. Golland and A.M. Bruckstein. Why RGB? Or How to Design Color Displays for Martians. GMIP: Graphical Models and Image Processing, 58(5):405-412, 1996.

Technical Reports, Memos and Internal Papers

B.T.T. Yeo, W. Ou, P. Golland. Invertible Filter Banks on the 2-Sphere. Technical report, 2006.

S. Mukherjee, P. Golland and D. Panchenko. Permutation Tests for Classification. MIT AI Lab Memo, AIM-2003-019, 2003.

P. Golland. Statistical Shape Amalysis of Anatomical Structures. MIT PhD Thesis. 2001.

P. Golland. Spatial Encoding In MRI And How To Make It Faster. Area Exam paper, 2000.

Posters/Abstracts

Y. Golland, P. Golland, S. Bentin, R. Malach. A fundamental subdivision of the human cortex into two global systems. Annual Meeting of the Organization for Human Brain Mapping. Poster #196, June 2007.

T. Jones, A. Carpenter, D. Sabatini, and P. Golland. Per-Cell Classification for Exploring High-Throughput, High-Content Image-Based Screens. In proceedings of 2006 Workshop on Multiscale Biological Imaging, Data Mining & Informatics, 35-37, September 2006.

W. Ou and P. Golland. Anatomically-Guided MRF Spatial Regularization Model for fMRI Detection. Annual Meeting of the Organization for Human Brain Mapping. Poster #522, June 2006.

A. E. Carpenter, T.R. Jones, P. Golland, D. Sabatini CellProfiler: Free Cell Image Analysis Software for High Throughput Screening. Society for Biomolecular Screening Annual Meeting. September 2005.

P. Golland, Y. Golland, R. Malach. Protocol-Free fMRI Analysis Using Clustering. Annual Meeting of the Organization for Human Brain Mapping. Poster #536, June 2005.

A. E. Carpenter, T.R. Jones, D. Wheeler, I.H. Kang, D. A. Guertin, P. Golland, D. Sabatini. CellProfiler: Free Cell Image Analysis Software. Computational and Systems Biology Initiative Symposium, January 2005.

M. Frumin, P. Golland, R.W. McCarley, Y. Hirayasu, D.F. Salisbury, R. Kikinis, M.E. Shenton. Shape differences in the corpus callosum in first episode schizophrenia and affective disorder. 37th Annual Meeting of the American College of Neuropsychopharmacology, Puerto Rico, 1998.

J. Richolt, P. Golland, C. S. Winalski, M. Anderson, A. Bhalero, S. Koskinen, S. Martin, R. Kikinis. The Digital Interactive Knee Atlas. American Academy of Orthopedic Surgeons Annual Meeting, Multimedia Education Demonstrations, New Orleans, LA, March 1998.

J. Richolt, C.S. Winalski, P. Golland, M. Halle, S. Nakajima, S. Martin, R. Kikinis. A Digital, Three Dimensional Knee Atlas for Teaching and Surgical Planning Using High Resolution MR Images. The Conference of German Society of Orthopedics and Traumatologists, Frankfurt, Germany, 1997.

Patents

P. Golland, S. Ho. Methods and systems for construction of ultrasound images. US Patent 6695778. February 24, 2004.

R. Szeliski, P. Golland. Method for performing stereo matching to recover depths, colors and opacities of surface elements. US Patent 5917937. June 29, 1999.