hsa AAAGAUCCUCAGACAAUCCAUGUGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAGGCAUGGAGCUGACA- miRbase UCSC ENSEMBL 1:209605478-209605587(+)             -49.02 ........((((....(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))).))))..
ptr AAAGAUCCUCAGACAAUCCAUGUGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAGGCAUGGAGCUGACA- miRbase UCSC ENSEMBL 1:189866769-189866878(+)             -49.02 ........((((....(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))).))))..
ggo AAAGAUCCUCAGACAAUCCAUGUGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAGGCAUGGAGCUGACA- miRbase                                                   -49.02 ........((((....(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))).))))..
ppy AAAGAUCCUCAGACAAUCCAUGUGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAGGCAUGGAGCUGAC-- miRbase UCSC ENSEMBL 1:40697508-40697616(-)               -49.02 ........((((....(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))).)))). 
mml AAAGAUCCUCAGGCAAUCCAUGUGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAGGCAUGGAGCUGACG- miRbase UCSC ENSEMBL 1:160974166-160974275(-)             -47.92 ........((((....(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))).))))..
cja ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL Contig330:13714-13783(-)             -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
tsy ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_6456:9032-9101(+)           -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
mmr ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUGGUCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_172:759204-759274(+)        -39.7                     ((((((..(((((((((((.((((((((((..........)))))))))).)))))))))))..))))))                    
oga ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL GeneScaffold_75:239508-239577(+)     -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
tbe ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_14612:289417-289486(+)      -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
cpo ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCU-GCGGC-AACC-AGACUUCAGUGGAGUGAAGCUCAGGAGUC-------------         UCSC ENSEMBL scaffold_12:13745517-13745586(-)     -38.2                     ((((((..(((((((((((.((((((((..((...))..)))))))).)))))))))))..))))))..                     
dor -----------------------------------------------------------------------------------------------------------------                      
mmu ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUUAUGCC-AACC-AGAUUUCAGUGGAGUGAAGCUCAGGAG--------------- miRbase UCSC ENSEMBL 1:195333657-195333724(-)             -33.9                      ((((((..(((((((((((.((((((((............)))))))).)))))))))))..))))))                     
rno -AAACAGCCCCAGACAAUCCAUGGGUCCUCCUGUCCUUCAUUCCACCGGAGUCUG-UCUUAUGCC-AACC-AGAUUUCAGUGGAGUGAAGCUCAGGAGGCAUGGAGCUGCCA- miRbase UCSC ENSEMBL 13:109352371-109352478(-)            -50.9  ...((((.........((((((...(((((((..(((((((((((.((((((((............)))))))).)))))))))))..)))))))))))))))))... 
str -----------------------------------------------------------------------------------------------------------------                      
opr ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL GeneScaffold_1446:1501322-1501391(+) -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
ocu ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_12:6976257-6976326(+)       -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
bta ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG--------------- miRbase UCSC ENSEMBL 16:72083257-72083325(-)              -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
ttr ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_115498:112418-112487(+)     -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
vpa -----------------------------------------------------------------------------------------------------------------                      
ssc ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGCUCAGGAG--------------- miRbase      ENSEMBL 9:126011588-126011656(-)             -33.82                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
cfa ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG--------------- miRbase UCSC ENSEMBL 7:11048072-11048140(+)               -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
fca ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL GeneScaffold_74:168726-168795(+)     -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
eca ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG--------------- miRbase UCSC ENSEMBL 5:28811800-28811868(-)               -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
mlu ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UUUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_185744:296970-297039(+)     -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
pva ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_1111:247619-247688(+)       -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
eeu -----------------------------------------------------------------------------------------------------------------                      
sar -------------------------------UGUCCUUCAUUCCACCGGAGUCUG-UCUC-UGCACAACC-AGAUUUCAGUGGAGUGAAGAGCAGGAGGCGU-----------              ENSEMBL scaffold_222846:17458-17526(-)       -29.2                      ((..(((((((((((.((((((((............)))))))).)))))))))))..))........                     
cho ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_1965:40973-41042(+)         -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
ete ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUUAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_288378:10683-10752(+)       -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
laf ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACCCAAUC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_13:15715564-15715633(+)     -35.22                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
pca ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UUUCAUACCCAACC-AGAUUUCAGUGGAGUGAAGUUCAGGAG---------------              ENSEMBL scaffold_26942:16401-16470(+)        -34.72                     ((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))                     
meu ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUAUGUAAUC-AGAUUUCAGUGGGGUGAAGCAUAAGA----------------              ENSEMBL Scaffold2297:12172-12240(-)          -30.52                      .((((((.(((((((((((.((((((((.............)))))))).))))))))))).))))))                     
mdo ---------------------------CUCUUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUAUCUAAUC-AGAUUUCAGUGGAGUGAAGCAUAAGA----------------         UCSC ENSEMBL 2:116544493-116544561(+)             -31.52                      .((((((.(((((((((((.((((((((.............)))))))).))))))))))).))))))                     
oan ---GAAUUCGGAACGAUCCAUGGGUUUCUGUUGUCCUUCAUUCCACCGGAGUCUG-UUUCGUACCUAAUC-AGAUUUCAGUGGAGUGAAGCACAAGAGGCAUGGAGUUGAAUC miRbase UCSC ENSEMBL 7:39687501-39687608(+)               -43.22  ..((((((.....((((((....(((.((((.(((((((((((.((((((((.............)))))))).))))))))))).)))).))))))))).)))))). 
gga ------------------------------UUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCUAACC-AGAUUUCAGUGGAGUGAAGCACAAGAGACA------------         UCSC ENSEMBL 26:2896065-2896134(+)                -29.12                     ((((.(((((((((((.((((((((.............)))))))).))))))))))).))))......                     
mga ------------------------------UUGUCCUUCAUUCCACCGGAGUCUG-UCUCGUACCCAACC-AGAUUUCAGUGGAGUGAAGCACAAGAGGCA------------         UCSC ENSEMBL 28:2574886-2574955(+)                -29.12                     ((((.(((((((((((.((((((((.............)))))))).))))))))))).))))......                     
tgu ---------------------GCCUUCCUGGUGCCCUUCAUUCCACCGGAAUCUG--UCGAUGCAGAACCCGGAUUUCAGUGAAAUGAAGCCCCUCAGAAAGGC--------- miRbase      ENSEMBL 1A:622279-622359(-)                  -29.8               (((((.((((....(((((((.(((.((((((((((......))...)))))))).))).)))))))....)))).)))))               
aca ------------------------------UUGUCCUUCAUUCCACCGGAGUCUG-UCUCAUAUCUAAUC-AGAUUUCAGUGGAGUGAAGCACAAGAGACA------------         UCSC ENSEMBL scaffold_13:6764339-6764408(+)       -29.62                     ((((.(((((((((((.((((((((.............)))))))).))))))))))).))))......                     
xtr -------------------------------UGUCCUUCAUUCCACCGGAGUCUG-UCUCAUACAUAAUC-AGAUUUCAGUGGAGUGAAGCACAAGAGGCA------------         UCSC ENSEMBL scaffold_61:840385-840453(+)         -28.72                      (((.(((((((((((.((((((((.............)))))))).))))))))))).))).......                     
dre ---------------AAACUACUGUGCAUUCUAUCCUUCAUUCCACCGGAGUCUGUGUAGUUGUUCAAUC-AGAUUUCAGUGGUGUGAAGUGUAGGAAACACGGA-------- miRbase UCSC ENSEMBL 23:32809227-32809315(+)              -35.3           ......(((((..(((((..((((((.((((.((((((((((........))..)))))))).)))).))))))..)))))..))))).           
gac -------------------------GUGUUCUGUCCUUCAUUCCACCGGAGUCUGUCUGUUU--CACACC-AGAUUUCAGUGGUGUGAAGUGUAAGAGACAU-----------         UCSC ENSEMBL groupXII:13937700-13937774(-)        -27.5                   ((.((.((..((((((.((((.((((((((..((.....)).)))))))).)))).))))))..)).)).))..                  
ola -------------------------------UGUCCUUCAUUCCACCGGAGUCUGUGCCUGUAUGGAACC-AGAUUUCAGUGGUGUGAAGUGUAAAAGACAUG----------         UCSC ENSEMBL 7:22980137-22980208(-)               -27.11                    ((((((((((.((((.((((((((..((.....))...)))))))).)))).)))))).......))))..                    
tru -----------------------------------------------------------------------------------------------------------------                      
tni -------------------------------UAUCCUUCAUUCCACCGGAGUCUGUAACUGUUUUUAACC-AGAUUUCAGUGGUGUGAAGUGUAAGAG--------------- miRbase UCSC ENSEMBL 9:9353930-9353995(-)                 -22.64                       ((..((((((.((((.((((((((..............)))))))).)))).))))))..))....                      
cin -----------------------------------------------------------------------------------------------------------------                      
csa -----------------------------------------------------------------------------------------------------------------                      
dme -----------------------------------------------------------------------------------------------------------------                      
cel -----------------------------------------------------------------------------------------------------------------                      
                                   *  **************** ****            * *  ** *******   *****      *                
                                   * **********************      *    ** * ************ ******   *  *                
                                   ************************      *    ** * ************ ******   * **                
                                   ************************      *    ** * ************ ******   * ***               
                                   ************************      *    ** * ************ ******   * ***               
                                   ************************ * *  *    ** * *******************   * ***               
                                   ************************ * *  *    ** * *******************  ** ***               
                                *  ************************ ***  *  * **** *******************  ** ***               
                                * ************************* ***  **** **** *******************  ** ***               
                               ** ************************* **** **** **** *******************  ** ***               
                               ** ************************* **** **** **** *******************  ** ***               
                               **************************** **** **** **** *******************  ******               
                               **************************** **** **** **** *******************  ******               
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                               **************************** ************** *************************** **            
                               **************************** ************** *************************** **            
                               **************************** ************** *************************** **            
                               **************************** ************** *************************** **            
                               **************************** ************** *************************** **            
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                   *  *    * * **************************** ************** **********************************        
                   *  *  * * ****************************** ************** *********************************** **    
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