hsa -------------------------------------------------------------------------------------------------------------------------------                      
ptr -------------------------------------------------------------------------------------------------------------------------------                      
ggo ----------CCGCCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCG----AGUCUAUGGCUCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGCGGG--- miRbase                                            -54.44       ((((...((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))...........)))).      
ppy ----------CCGCCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCG----AGUCUAUGGCCCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGCGGG--- miRbase UCSC ENSEMBL 6_qbl_hap2:1044940-1045049(+) -54.44       ((((...((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))...........)))).      
mml -------------------------------------------------------------------------------------------------------------------------------                      
cja -------------------------------------------------------------------------------------------------------------------------------                      
tsy -------------------------------------------------------------------------------------------------------------------------------                      
mmr -------------------------------------------------------------------------------------------------------------------------------                      
oga -------------------------------------------------------------------------------------------------------------------------------                      
tbe -------------------------------------------------------------------------------------------------------------------------------                      
cpo -------------------------------------------------------------------------------------------------------------------------------                      
dor -------------------------------------------------------------------------------------------------------------------------------                      
mmu -------------------------------------------------------------------------------------------------------------------------------                      
rno -------------------------------------------------------------------------------------------------------------------------------                      
str -------------------------------------------------------------------------------------------------------------------------------                      
opr -------------------------------------------------------------------------------------------------------------------------------                      
ocu -------------------------------------------------------------------------------------------------------------------------------                      
bta -------------------------------------------------------------------------------------------------------------------------------                      
ttr -------------------------------------------------------------------------------------------------------------------------------                      
vpa -------------------------------------------------------------------------------------------------------------------------------                      
ssc -------------------------------------------------------------------------------------------------------------------------------                      
cfa -------------------------------------------------------------------------------------------------------------------------------                      
fca -------------------------------------------------------------------------------------------------------------------------------                      
eca -----------------GGGCCGCGGCUCUUGAUUGUCCAAACGCAAUUCUCG----AGUCUCUGGCUCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCCGCCGCCC------------------- miRbase UCSC ENSEMBL 20:33649525-33649611(+)       -50.0                  ((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))                  
mlu -------------------------------------------------------------------------------------------------------------------------------                      
pva -------------------------------------------------------------------------------------------------------------------------------                      
eeu -------------------------------------------------------------------------------------------------------------------------------                      
sar -------------------------------------------------------------------------------------------------------------------------------                      
cho -------------------------------------------------------------------------------------------------------------------------------                      
ete -------------------------------------------------------------------------------------------------------------------------------                      
laf -------------------------------------------------------------------------------------------------------------------------------                      
pca -------------------------------------------------------------------------------------------------------------------------------                      
meu -------------------------------------------------------------------------------------------------------------------------------                      
mdo ---------------CAGGGGUUCCGCCGCUGAUUGUCCAAACGCAAUUCUUGUGCGAGUCUGCAG--CCAACCGAGAAUUGUGGCUGGACAUCUGUGGCUGAGCUCC------------------- miRbase UCSC ENSEMBL 1:454138610-454138700(-)      -47.2                ..(((((((.(((((.(((.(((((..(((((((((((((((....))))......)))))))))))..)))))))).))))).)))))))                
oan GGCCCAACCGAGCCAGCGGGGCCCCGCCGCUGAUUGUCCAAACGCAAUUCUUGUGCGAGUUUGCGG--CCAACCGAGAAUUGUGACUGGACAUCUGUGGCUGGGCUCCCGGCGCGACGCGGGCC--- miRbase UCSC ENSEMBL Contig12675:21656-21777(-)    -66.2 (((((...((.(((...(((((((.(((((.(((.(((((..((((((((((..(((....)))((....))))))))))))..)))))))).))))).))))))).))).))....)))))
gga ---------------------CUCUGCUCCUGAUUGUCCAAACGCAAUUCUUGUGCGCUGGAGCCGUACGAACCAAGAAUUGUGUCUGGACAUCUGUAGCAGAGAU--------------------- miRbase UCSC ENSEMBL 17:5577817-5577901(+)         -39.2                   (((((((...(((.(((((.(((((((((((((((((....)).)))).....))))))))))).))))))))...)))))))..                   
mga -------------------------------------------------------------------------------------------------------------------------------                      
tgu --------------------UCUCCGCUCCUGAUUGUCCAAACGCAAUUCUUGUGCGAUGGAGCCGUACGAACCAAGAAUUGUGUCUGGACA----------------------------------- miRbase      ENSEMBL 17:5454954-5455025(+)         -28.6                          ..............((((((.((((((((((((..(((((....))).))...)))))))))))).))))))                         
aca ----------------------------CCUGAUUGUCCAAACGCAAUUCUUG----UCUCC---GCUCCA-CCGAGAGUUGAGUCUGGACAUCAGGAGCCGGAGG---------------------         UCSC ENSEMBL scaffold_1372:63517-63587(-)  -27.5                           ((((((.(((((.((.(((((((((............))))))))).)).))))))))))).........                          
xtr --------------AUGGAGCUCUCGCCCUUGAUUGUCCAAACGCAAUUCUUGUUCCAAUAGAAAUAUCAAGCCAAGAAUUGUGCCUGGACAUCUGUGGCUGGUGAUCC------------------ miRbase UCSC ENSEMBL scaffold_1845:25832-25926(+)  -34.4              ..(((...((.(((...(((.(((((..(((((((((((.....(((....))).....)))))))))))..))))))))...))).))...)))              
dre -------------------------------------------------------------------------------------------------------------------------------                      
gac -------------------------------------------------------------------------------------------------------------------------------                      
ola ------------------------------UGAUUGUCCAAACGCAAUUCUUGUG--GUCCGUCUA---GAUCCAGGAGUUGUGGAUGGACAUCAUGCCCCCA------------------------         UCSC ENSEMBL 16:12600027-12600095(-)       -30.4                            ((((.(((((..(((((((((((.((((......)))))))))))))))..)))))))))........                           
tru -------------------------------------------------------------------------------------------------------------------------------                      
tni ----------------------------GUUGAUUGUCCAAACGCAAUUCUUGUGUGAUUUCUCCA---UAUUCAGGAGUUGUGGAUGGACAUCAUGCC----------------------------         UCSC ENSEMBL 8:6475925-6475993(-)          -27.0                            ..((((.(((((..(((((((((((((((.......))))..)))))))))))..)))))))))....                           
cin ---------------AUGGCGUCUGUUUCGUGAUUGUCCAAACGCAAGCUCAGUUUUAAAAUA----------CUGCGAUUGUGUCUGGACAUCUCAAAUCAGAAGGCUGCUGUCUUCAAAAACCAA miRbase UCSC ENSEMBL 7q:5634284-5634385(+)         -31.3           .(((...........(((.((((((.((((((...((((........))))...)))))).))))))..))).....((((((....)))))).....))).          
csa ---------------AUGGCGACUGUUUCAUGAUUGUCCAAACGCAAUACAGGUGUUACAAUAA------AUUCUGUGUUUUCGUAUGGACAUCGUAAUACAGAGUGUCACAUGCUUCAUCAA---- miRbase      ENSEMBL reftig_67:317190-317291(+)    -29.12           .(((((.((((...(((((.(((((.(((.((((((((.............))))))))..))).))))))))))...))))..))))).............          
dme ------------UAAUUCGAUUUUUAGCUAUGAUUGUCCAAACGCAAUUCUUGUU--GAUAUUCAA---UAUUCAAGGGUUGCGACUGGGCAUCGCGGCUCGAAAUAAGAAUACAAC---------- miRbase UCSC ENSEMBL 3L:17308106-17308205(+)       -34.6            ..((((.(((((.(((..((((.(((((..((((((((((((((.....)))....)))))))))))..)))))))))..))).)))))..)))).....           
cel -------------------------------------------------------------------------------------------------------------------------------                      
                                  *****************     *                    *     **  *  *** *                                    
                                  ****************** *  *                    *     *** *  ***** **                                 
                                  ********************* *                    *  *  *** *  ***** **                                 
                                  ********************* *                    *  ** *** * *********                                 
                                  ********************* **   *            * ** *** *** * *********                                 
                                * ************************   * *        * * ** *** *** * *********     * *                         
                     **      ** * ************************   * * *   *  * * ** *** ***************    ****                         
                     **    * ******************************  * * * * *  * * ** *******************  ******     *                   
                     *** * * ******************************  * *** * *  *** **********************  ******  *  *                   
                     *** * ***************************************** *  *** ******************************* *****                  
                     ********************************************************************************************    **** *        
                 ************************************************************************************************ ************     
              ******************************************************************************************************************   
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