==============================================
2012-08-31 00-12-33
Options:
--rdbexptHoxc6 "PPG Day5 iHoxc6-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc6 "PPG Day5 iHoxc6-FLAG p2A;2_06-20-11;bowtie_unique" --rdbctrlHoxc6 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9 p2A;3_11-02-10;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9 p2A;1;bowtie_unique" --rdbctrlHoxc9 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --rdbexptHoxc10 "PPG Day5 iHoxc10-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc10 "PPG Day5 iHoxc10 p2A;2_12-01-10;bowtie_unique" --rdbctrlHoxc10 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --out iHox --top 4000 --k 8 --species "Mus musculus;mm9" --s 2080000000 --gc0 0.42 --ex mm9_excludes.txt --d Read_Distribution_default.txt --print_all_kmers --v 2 

Exclude 18 regions.


At Poisson p-value 1.0e-04, in a 545bp window, expect 48 reads (minimum alpha value, can be overridden with --a option).


The genome is segmented into 1755760 regions for analysis.
BindingMixture initialized. 3 conditions.
Running with 16 threads ...
Finish predicting events: 45.4m

---------------------------
Events discovered 
Significant:	45960
Insignificant:	89972
Filtered:	1217

Finish binding event prediction: 45.6m

Refine read distribution from 4000 binding events. 

Running with 16 threads ...
Finish predicting events: 8.2m

---------------------------
Events discovered 
Significant:	43792
Insignificant:	51535
Filtered:	13

Finish binding event prediction: 8.3m

Refine read distribution from 4000 binding events. 

Running with 16 threads ...
Finish predicting events: 9.1m

---------------------------
Events discovered 
Significant:	41948
Insignificant:	49526
Filtered:	12

Finish binding event prediction: 9.2m


==============================================
2012-09-02 14-09-34
Options:
--rdbexptHoxc6 "PPG Day5 iHoxc6-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc6 "PPG Day5 iHoxc6-FLAG p2A;2_06-20-11;bowtie_unique" --rdbctrlHoxc6 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9 p2A;3_11-02-10;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9 p2A;1;bowtie_unique" --rdbctrlHoxc9 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --rdbexptHoxc10 "PPG Day5 iHoxc10-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc10 "PPG Day5 iHoxc10 p2A;2_12-01-10;bowtie_unique" --rdbctrlHoxc10 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --out iHox --top 4000 --k 8 --species "Mus musculus;mm9" --s 2080000000 --gc0 0.42 --ex mm9_excludes.txt --d Read_Distribution_default.txt --print_all_kmers --k_seqs 1000000 --v 2 

Exclude 18 regions.


At Poisson p-value 1.0e-04, in a 545bp window, expect 48 reads (minimum alpha value, can be overridden with --a option).


The genome is segmented into 1755760 regions for analysis.
BindingMixture initialized. 3 conditions.
Running with 16 threads ...
Finish predicting events: 27.3m

---------------------------
Events discovered 
Significant:	45958
Insignificant:	89978
Filtered:	1217

Finish binding event prediction: 27.5m

Refine read distribution from 4000 binding events. 

Running with 16 threads ...
Finish predicting events: 8.2m

---------------------------
Events discovered 
Significant:	43787
Insignificant:	51530
Filtered:	14

Finish binding event prediction: 8.4m

Refine read distribution from 4000 binding events. 

Running with 16 threads ...
Finish predicting events: 9.0m

---------------------------
Events discovered 
Significant:	42083
Insignificant:	50254
Filtered:	14

Finish binding event prediction: 9.2m