java -Xmx15G -jar /cluster/yuchun/GPS/gem.jar  --rdbexptHoxc6 "PPG Day5 iHoxc6-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc6 "PPG Day5 iHoxc6-FLAG p2A;2_06-20-11;bowtie_unique" --rdbctrlHoxc6 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9 p2A;3_11-02-10;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc9 "PPG Day5 iHoxc9 p2A;1;bowtie_unique"  --rdbctrlHoxc9 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique"  --rdbexptHoxc10 "PPG Day5 iHoxc10-FLAG p2A;1_12-01-10;bowtie_unique" --rdbexptHoxc10 "PPG Day5 iHoxc10 p2A;2_12-01-10;bowtie_unique"  --rdbctrlHoxc10 "PPG Day5(iHoxc10.V5+Dox) antiFLAG p2A;1_06-20-11;bowtie_unique" --out iHox --top 4000 --k 8 --species "Mus musculus;mm9" --s 2080000000 --gc0 0.42 --ex mm9_excludes.txt --d Read_Distribution_default.txt --print_all_kmers --k_seqs 1000000 --v 2 > iHox.report 2>&1 &