Computational Biology Web Servers and Software
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AmyloidMutants Sequence-based predictions of amyloid fibril structure and mutational analysis of sequence perturbations. A statistical mechanics based approach identifies sets of energetically favorable structures and individual residue/residue contact likelihood. [Related publication] |
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partiFold Align Simultaneous sequence alignment and consensus structure prediction of transmembrane β-barrel proteins. Joint optimization of sequence fit and conformational energetics allows for the alignment of distant homologs and improved structure prediction. [Related publication] |
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partiFold TMB Sequence-based prediction of energetically favorable transmembrane β-barrel protein structures and residue contact probabilities. Using statistical mechanics principles, structural landscapes also identify residue/residue contact likelihoods. [Related publication] |
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tFolder Sequence-based prediction of coarse grained folding pathways for β-sheet proteins. [Related publication] |
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Other Tools
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MINIMALIST Computer aided design software for the synthesis and optimization of asynchronous logic circuits. |