John Ingraham

I'm a researcher interested in (bio)molecules, genetics, and machine learning.

Currently I'm a postdoc at the MIT Computer Science and Artificial Intelligence Laboratory (CSAIL) advised by Tommi Jaakkola and Regina Barzilay as part of the MLPDS consortium. We're working to accelerate the process of molecular and macromolecular design and discovery with structured machine learning models.

Previously, I was a PhD student in Debora Marks' lab at Harvard Medical School. We focused on building probabilistic models of deep evolutionary variation in proteins and RNAs to better decode how the structure, function, and physiological relevance of biomolecules is encoded in their genetic sequence.

[Google Scholar] [Github]

Selected Preprints and Publications