hsa-mir-539 ATACTTGAGGAGAAATTATCCTTGGTGTGTTCGCTTTATTTATGAT---GAATCATACAAGGACAATTTCTTTTTGAGTAT
hsa-mir-539 (((((..((((((((((.((((((.(((((((((.........).)---))).)))))))))).))))))))))..)))))
human ·········•••••••······························---································ hsa-mir-539 [cloned]
chimp ·········•••••••······························---································ ptr-mir-539
gorilla ·········•••••••······························---································
orangutan ·········•••••••······························---································
rhesus ·········•••••••······························---································ mml-mir-539
marmoset ····C····•••••••········A·····················---······················C·········
tarsier ·········•••••••···················C··········---································
bushbaby ······A··AG••••AC·········A····TA········G····GAATC·······················A······
mouseLemur ·C···G···•••C•••··C·····C·······A········G···C---T··C··C········GG··C·······G····
treeShrew ---------------------------------------------------------------------------------
guineaPig ·········•••••••················A·········G··A---································
kangarooRat ·········•••••••···············T··········G··C---································
mouse ·········•••••••···············G···C--···TG···---··············T················· mmu-mir-539 [MPSS]
rat ·········•••••••···············T···C--···TG···---·············GT··········C······ rno-mir-539 [cloned]
squirrel ·CC··G···•••••••············A···A·······GGG···---································
pika ·········•••••••···················G·····G····---································
rabbit ·········•••••••························CG····---································
alpaca ---------------------------------------------------------------------------------
cow ·········•••••••·························GG···---························C·······
dolphin ·······G·•••••••·························G····---································
cat ·········•••••••·········C········GA·G···G····---·························G······
dog ·········•••••••···················G·G···G···G---································
horse ·········•••••••········C················G····---································
megabat ·········•••••G•·························G···G---······························G·
microbat ·········•••••••·············C····G·CT···G····---································
hedgehog G·G·C····•••••G•·GC··A··T·C·T·······G··ACG···C---···A··A···T··TGC·C········CG··G·
shrew ---------------------------------------------------------------------------------
armadillo ·········•••••••······························---································
sloth ---------------------------------------------------------------------------------
elephant ---------------------------------------------------------------------------------
rockHyrax ---------------------------------------------------------------------------------
tenrec C········•••••••··C············G······-·C·C··C---A······C···············G········
opossum ---------------------------------------------------------------------------------
platypus ---------------------------------------------------------------------------------
chicken ---------------------------------------------------------------------------------
zebraFinch ---------------------------------------------------------------------------------
lizard ---------------------------------------------------------------------------------
frog ---------------------------------------------------------------------------------
fugu ---------------------------------------------------------------------------------
tetraodon ---------------------------------------------------------------------------------
medaka ---------------------------------------------------------------------------------
stickleback ---------------------------------------------------------------------------------
zebrafish ---------------------------------------------------------------------------------
lamprey ---------------------------------------------------------------------------------
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