hsa-mir-99a CCCATTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCG-----CACAAGCTCGCTTCTATGGGTCTGTGTCAGT---GTG
hsa-mir-99a ..((((((((((.(((((((((..(((.((((((.((........))-----)))))).)))..))))))))).)))))))))---)..
human ·············•••••••···························-----·······························---··· hsa-mir-99a [cloned]
chimp ·············•••••••···························-----·······························---··· ptr-mir-99a
gorilla ·············•••••••···························-----·······························---···
orangutan ·············•••••••················A··········-----·······························---···
rhesus ·············•••••••···························-----·······························---··· mml-mir-99a [cloned]
marmoset ·············•••••••···························-----·······························---···
tarsier ·T···········•••••••···················C·······-----·······························---···
bushbaby ·············•••••••···························-----·······························---···
mouseLemur ·············•••••••················A··········-----·······························---·C·
treeShrew ··TG·········•••••••···························-----·······························---···
guineaPig ··TG·········•••••••················A········G·-----·····························A·---···
kangarooRat ···G·········•••••••··················G···A···T-----·······························---···
mouse ·······A·····•••••••···························-----·G········T···············G····---··· mmu-mir-99a [cloned]
rat ·············•••••••···························-----··········T···············G····---··· rno-mir-99a [cloned]
squirrel ·············•••••••···················A·······-----·······························---···
pika -----------------------------------------------------------------------------------------
rabbit ·············•••••••···························-----·······························---···
alpaca ·············•••••••···························-----·······························---···
cow ·············•••••••···························-----·······························---··· bta-mir-99a [cloned]
dolphin -----------------------------------------------------------------------------------------
cat -----------------------------------------------------------------------------------------
dog ·············•••••••·························G·-----·······························---··· cfa-mir-99a-1 [Solexa]
horse ·············•••••••··························T-----·······························---···
megabat ·············•••••••···························-----·······························---···
microbat ·············•••••••···························-----·······························---···
hedgehog ·············•••••••·························G·-----·······························---···
shrew ·············•••••••················A········A·-----·······························---···
armadillo ·············•••••••···························-----·······························---·C·
sloth ·············•••••••······················A····-----······················C········---·C·
elephant ·············•••••••······················A····-----·······························---···
rockHyrax ····C········•••••••················A········G·-----···························G···---·C·
tenrec -----------------------------------------------------------------------------------------
opossum -----------------------------------------------------------------------------------------
platypus ··AG·········•••••••······················A·ATA-----···········C···C···············---···
chicken ··A··········•••••••··············T····A··C··T·-----·······························---A·· gga-mir-99a [cloned]
zebraFinch ··A··········•••••••··············T····AC·C··T·-----·······························---···
lizard ··A··········•••••••·····················AT·AT·-----····························CC·---A··
frog ··T·C·AA·····•••••••···················T·CCTTT·-----·T········T··················T·---A··
fugu ···GC··C··C··•••••••·······A··········--CT·G···-----··········TA·····A···A······C·C----CA
tetraodon ·TG·CG·A·TCG·•••••••·······A······T·AC--CT···T·GAAGC··········GA····CA······C···C·C---·CA
medaka ··AT······C··•••••••···············AA··TCT···G·-----···········C···G·······C·······---···
stickleback ··AT······C··•••••••···············CA··TCT···A·-----···········C···G·······T·····T·---···
zebrafish ··AGC··C··C··•••••••·······A·········T--CTCTGT·-----··········TG·····A···A······T·CGAG··· dre-mir-100-2 [cloned]
lamprey -----------------------------------------------------------------------------------------
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