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Local rule simulations of capsid assembly |
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Russell Schwartz, Peter W. Shor and Bonnie Berger |
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Local rules theory describes virus capsid self-assembly in terms of simple local binding preferences of
discrete subunit conformations. The theory offered a parsimonious explanation for the complexity and
regularity of virus capsids that resolved several inconsistencies between experimental observations and
prior theories. Simultaneously, it provided a valuable practical abstraction for simulating the assembly
process. Local rule models offered important advantages over other methods in rapidly developing
simulations of complex geometries and assembly processes. Subsequent extensions considerably
augmented the range of assembly phenomena amenable to simulation studies. Here we review the
development of local rule-based simulation models and their applications to basic biology and
medicine. We conclude by discussing the future prospects of local rule models for in silico
experimentation with capsid assembly.
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URL:http://www.tandf.co.uk/journals
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