The scaffolding core in bacteriophages is a temporary structure
that plays a major role in determining the shape of the protein
shell that encapsulates the viral DNA. In the currently accepted
structure for the scaffolding core in bacteriophage T4, there is a
symmetry mismatch between the protein shell, which has fivefold
symmetry, and the scaffolding core, which is believed to consist
of six helical chains. Alternate structures for the scaffolding
core in T4 are investigated. Starting with the hypothesis that the
shell and a 10-helix core would have matching symmetry, a Vernier
mechanism is proposed that explains the previously unexplained
behavior of the length determination process in giant head mutants
of T4. Other possible Vernier mechanisms for core structures
containing six and eight helices are also explored.
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