BisSNP easy usage pipeline

Download Utils.zip. Unzip Utils.zip, put BisSNP.jar into the same folder with these perl scripts. Follow the usage description in bissnp_easy_usage.pl, it will automately run the whole genotyping pipeline using Bis-SNP. For example:

• perl bissnp_easy_usage.pl --interval Interval_list-test.bed BisSNP-0.71.jar normalMerge_chr11-7M-9M.nodups.withhead.bam hg18_unmasked.plusContam.fa dbsnp_135.hg18.sort.vcf

Detail information

Please refer to UserManual.pdf for much more detailed information