I have had the privilege since 1974 of working with some of the world’s best students at MIT.  This listing, in chronological order and categorized by their educational level, shows their research theses, and in some cases links to the documents themselves. I have also hosted a few post-doctoral fellows and trainees in our biomedical informatics training program, and I list them even though they did not write theses under my supervision.  A number of students also worked on their research under the co-supervision of colleagues, in which case I have tried to list their co-supervisors.

Doctoral Theses, Supervisor

1. 1.Swartout, William R. "Producing Improved Explanations and Justifications of Expert Consulting Programs Using an Automatic Programming Approach." Jan 1981.
   

2. 2.Patil, Ramesh. "A Program for Expert Diagnosis and Treatment of Acid-Base and Electrolyte Disturbances." Oct 1981.
   

3. 3.Smith, Brian C. "Procedural Reflection in Programming Languages." Jan 1982.
   

4. 4.Kohane, Isaac S. "Temporal Reasoning in Medical Expert Systems." MD/PhD program, Boston University. Co-supervised with William Henneman. May 1987.
   

5. 5.Koton, Phyllis. "Using Experience in Learning and Problem Solving." Jul 1988.
   

6. 6.Wellman, Michael P. "Formulation of Tradeoffs in Planning Under Uncertainty." Jul 1988.
   

7. 7.Yeh, Alex. "Automated Analysis of Systems at Steady-State: Handling Iterative Dynamic Systems and Parameter Uncertainty." Aug 1990.
   

8. 8.Russ, Tom. "Reasoning with Time-Dependent Data." Aug 1991.
   

9. 9.Groleau, Nick. "Model-based Theory Refinement as a Diagnostic Problem." Co-supervised with Laurence R. Young. Aug 1992.
   

10. 10.Amsterdam, Jonathan. "Automated Qualitative Modeling of Physical Systems." Jan 1993.
    

11. 11.Jang, Yeona. "A Hybrid System with Feedback for Diagnosis of Multiple Disorders: HYDI." Aug 1993.
    

12. 12.Haimowitz, Ira. "Automated Trend Detection from Time-Ordered Data." Co-supervised with Isaac S. Kohane. May 1994.
    

13. 13.Leong, Tze-Yun. "Toward a General Framework of Automated Dynamic Decision Making." Aug 1994.
    

14. 14.Hauskrecht, Milos. "Planning and control in stochastic domains with imperfect information." Available as MIT-LCS-TR-738. Aug 1997.
    

15. 15.Steward, Duane. "Utility Assessment Based on Individualized Patient Perspectives." Sep 1998.
    

16. 16.Mohtashemi, Mojdeh. "Qualitative Analysis of Transience in Population Dynamics." Mar 2000.
    

17. 17.Tsien, Christine. "TrendFinder: Automated Detection of Alarmable Trends." Co-supervised with Isaac S. Kohane. Apr 2000.
    

18. 18.Sun, Yao. "Information Exchange between Medical Databases through Automated Identification of Concept Equivalence." Oct 2001.
    

19. 19.Mui, Lik. "Computational Models of Trust and Reputation: Agents, Evolutionary Games, and Social Networks." Co-supervised with Mojdeh Mohtashemi. Dec 2002.
    

20. 20.Shen, Delin. "An Exploratory Analysis of a Large Health Cohort Study Using Bayesian Networks." Feb 2006.
    

21. 21.Trepetin, Stanley. "Privacy in Context: The Costs and Benefits of a New Deidentification Method." Jun 2006.
    

22. 22.McGeachie, Michael. "The Local Geometry of Multiattribute Tradeoffs." Co-supervised with Jon Doyle. Jan 2007.
    

23. 23.Perry, John C. "The Psychophysiology of Risk Processing and Decision Making at a Regional Stock Exchange." Co-supervised with Andrew W. Lo. May 2007.
    

24. 24.Lasko, Tom. "Improving methods of anonymization of privacy-sensitive databases." Co-supervised with Staal Vinterbo. Aug 2007.
    

25. 25.Cassa, Chris. "Privacy and Identifiability in Clinical Research, Personalized Medicine, and Public Health Surveillance." Aug 2008.
    

26. 26.Hug, Caleb. “Detecting Hazardous Intensive Care Patient Episodes Using Real-time Mortality Models.” May 2009.
    

27. 27.Rudin, Robert. Using Information Technology to Exchange Health Information among Healthcare Providers: Measuring Usage and Understanding Value. Engineering Systems Division, co-supervised with Stuart Madnick. Aug 2011.
    

28. 28.Bodnari, Andreea. “Joint Multilingual Learning for Coreference Resolution.” Co-supervised with Pierre Zweigenbaum, LIMSI, France, and Özlem Uzuner, SUNY/Albany.  May 2014.
    

29. 29.Meyer, Mark. “Predicting Outcomes in Anesthesia by Machine Learning and Large Datasets.” On leave to complete his anesthesia training.
    

30. 30.Luo, Yuan. “Towards a Unified Multi-Modal Knowledge Representation and Learning Framework in the Biomedical Domain.” Aug. 2015.
    

31. 31.Zhang, Ying. "Prediction for Glycemic Control in Critical Care." On leave.
    

32. 32.Ghassemi, Marzyeh. “Representation Learning in Multi-dimensional Clinical Timeseries for Risk and Event Prediction.” Expected June 2017.
    

33. 33.Dernoncourt, Franck. “Sequential Short-Text Classification with Neural Networks.” Expected June 2017.
    

34. 34.Lee, Jenny (Ji Young). “Medical Information Extraction with Neural Networks.” Expected June 2017.
    

35. 35.Naumann, Tristan. Developing proposal on using linguistic analysis to understand clinical narratives.
    

36. 36.Boag, William. Developing proposal on interpreting psychiatric notes.
    

37. 37.McDermott, Matthew. Developing proposal on genomic translational data analysis.
    

Doctoral Theses, Reader

1. 1.Borkin, Sheldon. "Equivalence Properties of Semantic Data Models for Database Systems." Jan 1979.
   

2. 2.Sidner, Candace. "Towards a Computational Theory of Definite Anaphora Comprehension in English Discourse." Jun 1979.
   

3. 3.Doyle, Jon. "Reflexive Interpreters." Jun 1980.
   

4. 4.Church, Kenneth W. "Phrase-Structure Parsing: A Method for Taking Advantage of Allophonic Constraints." Jan 1983.
   

5. 5.Fieschi, Marius. "Sphinx, un systeme d'aide a la decision en medecine." Faculte de Medecine de Marseille. Apr 1983.
   

6. 6.Shibahara, T. "On Using Causal Knowledge to Recognize Vital Signals: A Study of Knowledge-based Interpretation of Arrythmias." Dept. of Computer Science, University of Toronto. Oct 1985.
   

7. 7.McAllester, David. "ONTIC: A Knowledge Representation System for Mathematics." May 1987.
   

8. 8.Sacks, Elisha. "Piecewise Linear Reasoning." Feb 1988.
   

9. 9.Hamscher, Walter. "Diagnostic Reasoning for Digital Devices with Static Storage Elements." May 1988.
   

10. 10.Simmons, Reid. "Generate, Test and Debug: A Paradigm for Interpretation Problems in Geology." May 1988.
    

11. 11.Van Baalen, Jeff. "Constructing Specialized Representations for Analytical Reasoning Problems." Jan 1989.
    

12. 12.deJong, Peter. "Ubik: A Framework for the Development of Distributed Organizations." Aug 1989.
    

13. 13.Reubenstein, Howie B. "A Requirements Analyst's Apprentice." May 1990.
    

14. 14.Wills, Linda M. "Determining the Limits of Automated Program Recognition." Mar 1992.
    

15. 15.Wu, Tom. "A Decompositional Approach to the Diagnosis of Multiple Disorders." May 1992.
    

16. 16.Rymon, Ron. "Diagnostic Reasoning and Planning in Exloratory-Corrective Domains." Dept. of Computer and Information Science, U. of Pennsylvania. Jun 1993.
    

17. 17.Rojas-Guzman, Carlos. "An Evolutionary Programming Approach to Probabilistic Model-based Fault Diagnosis of Chemical Processes." Chemical Engineering Dept., MIT. Dec 1994.
    

18. 18.Dellarocas, Chrysanthos. "A Coordination Perspective on Software Architecture: Towards a Design Handbook of Reusable Software Glue." Feb 1996.
    

19. 19.Bernstein, Abraham. "Populating the Specificity Frontier: IT Support for Improvisational and Adaptive Business Processes." Sloan School. Aug 2000.
    

20. 20.Sweeney, Latanya. "Computational Disclosure Control." May 2001.
    

21. 21.Lee, Tom. "Attribution Metadata for Internet Data Management." Technology, Management and Policy Program. Jan 2002.
    

22. 22.Chklovski, Timothy A. "Using Analogy to Acquire Commonsense Knowledge from Human Contributors." Feb 2003.
    

23. 23.Kumar, Vikram Sheel. "The Design and Testing of a Personal Health System to Motivate Adherence to Intensive Diabetes Management." MD Thesis, HST. Feb 2004.
    

24. 24.Butte, Atul J. "Exploring Genomic Medicine Using Integrative Biology." Jun 2004.
    

25. 25.Steinkraus, Kurt. "Solving large stochastic planning problems using multiple dynamic abstractions." May 2005.
    

26. 26.Varma, Chris. "Quantitative analysis of splicing isoform expression profiles of CD44 in a subset of human cancers." May 2005.
    

27. 27.Lacson, Ronilda. "Home Care for Renal Dialysis Patients." Aug 2005.
    

28. 28.Sung, Michael. "Using wearable technology for non-invasive physiological and contextual ambulatory/wearable sensing." Nov 2005.
    

29. 29.Peters, Stephen. "Knowledge Representation and Resource Management in Distributed, Pervasive, Intelligent Environments." May 2006.
    

30. 30.Saeed, Mohammed. "Temporal Pattern Recognition in Multiparameter ICU Data." June 2007.
    

31. 31.Blair, Michael R. " Descartes: Dynamically Emergent Specialization via Contextually Adaptive Re-compilation using Task Execution Spectra for Profile-Driven Polyvariant On-Line Partial Evaluation." Defended Aug 2007.
    

32. 32.Pulim, Vinay. "Localized Methods for Protein Interaction Prediction." May 2008.
    

33. 33.Blaya, Joaquin. "Implementation and evaluation of laboratory information systems in resource-poor settings." December 2008.
    

34. 34.Bryan, Allen W., Jr. “Prediction Of Parallel In-Register Amyloidogenic Beta-Structures in Highly Beta-Rich Protein Sequences by Pairwise Propensity Analysis.” Sep 2009.
    

35. 35.Chao, Chih-Yu. “A Rule-based Decision-making System for a ‘Polite’ Mobile Device.” Dec 2010.
    

36. 36.Klann, Jeffrey. “An Automated System for Generating Situation-Specific Decision Support in Clinical Order Entry from Local Empirical Data.” School of Informatics, Indiana University.  Aug 2011.
    

37. 37.Palmer, Nathan. “Generating High-Confidence Phenotype Class Labelings for Biological Experiments.” Aug. 2011.
    

38. 38.Shen, Yuan Kui. "Discovering Interpersonal Relationships from Language Use." Aug 2011.
    

39. 39.Finlayson, Mark. "Learning Narrative Structure from Annotated Folktales." Oct 2011.
    

40. 40.Sauper, Christina. “Content Modeling for Text Analysis.” Jun 2012.
    

41. 41.Shih, Fuming. “Paraclete: A privacy assistant for context-aware platforms.”  Feb 2015.
    

42. 42.Mateus, Ashley. “Evaluation of Teledermatology in the Veterans Health Administration. Feb 2015.
    

43. 43.Arjun  (Raj) K. Manrai. “Statistical Foundations for Precision Medicine.” Health Sciences and Technology. Feb 2015.
    

44. 44.Pivovarov, Rimma. “EHR Summarization over Heterogeneous and Irregularly Sampled Clinical Data.” Columbia University Dept. of Biomedical Informatics. June 2015.
    

45. 45.Altshuler, Robert. “Computational Personal Genomics: Understanding the Functional Effects of Sequence Variation.” Aug. 2015.
    

46. 46.Farve, Niaja. “Wearable Applications for Improved Well-Being.” June 2016.
    

47. 47.Wang, Tong. “Interpretable Machine Learning for Finding Decision-Oriented Patterns in Data.” June 2016.
    

48. 48.Gombolay, Matthew. Developing thesis on joint human-robot scheduling in manufacturing and health care. Dec 2016.
    

49. 49.Kim, Yongwook Bryce. “Mining Massive Physiological Waveform Repositories for Large-Scale Patient Retrieval and Critical Event Prediction.” May 2017.
    

50. 50.Haslam, Bryan. “Learning diseases from data.” Aug 2017.
    

51. 51.Berzak, Yevgeni. “Language Learning from a Multilingual Perspective.” Nov 2017.
    

52. 52.Belinkov, Yonatan. Internal Representations in Deep Learning for Language and Speech Processing. April 2018.
    

53. 53.Goh, Siong Thye. Machine learning approaches to challenging problems: interpretable imbalanced classification, interpretable density estimation, and causal inference. April 2018.
    

54. 54.Nosakhare, Ehimwenma. A Probabilistic Framework for Assessing Well-Being and Recommending Healthy Behaviors. MIT Media Lab. Expected June 2018.
    

55. 55.Prasad, Varesh. Developing a thesis on management of sepsis in emergency medicine.  Expected Sep 2018.
    

Master’s (S.M. and M.Eng.) and Engineer’s Theses

1. 1.Swartout, William R. "A Digitalis Therapy Advisor with Explanations." Co-supervised with W. A. Martin. Feb 1977.
   

2. 2.Smith, Brian C. "Levels, Layers, and Planes: The Framework of a System of Knowledge Representation Semantics." Jan 1978.
   

3. 3.Bruccoleri, Robert. "English Conversational Error Correction in a Natural Language Parser." Sep 1978.
   

4. 4.Church, Kenneth W. "On Memory Limitations in Natural Language Processing." Jun 1980.
   

5. 5.Sherman, Howie. "A Comparative Study of Computer-Aided Clinical Diagnosis of Birth Defects." Jan 1981.
   

6. 6.Asbell, Irwin J. "A Constraint Representation and Explanation Facility for Renal Physiology." Aug 1982.
   

7. 7.Masand, Brij. "A Cancer Protocol Writer's Assistant." Aug 1982.
   

8. 8.Granville, Robert. "Cohesion in Computer Text Generation: Lexical Substitution." Co-supervised with R. Berwick. May 1983.
   

9. 9.Russ, Tom. "Ventricular Arrhythmia Management: A Knowledge-Based Approach." May 1983.
   

10. 10.Koton, Phyllis. "A System to Aid in the Solution of Problems in Molecular Genetics." May 1983.
    

11. 11.Barton, G. Edward. "A Multiple-Context Equality-Based Reasoning System." Co-supervised with R. Waters. Jun 1983.
    

12. 12.Sacks, Elisha. "Qualitative Mathematical Reasoning." Nov 1984.
    

13. 13.Reubenstein, Howie B. "OPMAN: An OPS5 Rule Base Editing and Maintenance Package." Feb 1985.
    

14. 14.Wellman, Michael P. "Reasoning about Preference Models." May 1985.
    

15. 15.Kunstaetter, Robert. "Intelligent physiologic modeling: An Application of Knowledge Based Systems Technolog." Co-supervised with G. Octo Barnett. Apr 1986.
    

16. 16.Harris, Nomi. "Probabilistic Reasoning in the Domain of Genetic Counseling." May 1989.
    

17. 17.Aghassi, David. "Evaluating Case-Based Reasoning for Heart Failure Diagnosis." Jun 1990.
    

18. 18.Leong, Tze-Yun. "Knowledge Representation for Supporting Decision Model Formulation in Medicine." Aug 1990.
    

19. 19.Lai, S.-H. "CLIPSBASE: A Real-Time Relational Database for the 'Principal Investigator-in-a-Box'." Co-supervised with Laurence R. Young. Jan 1991.
    

20. 20.Wu, Jennifer W. "Space-Time Trade Off via Loop-Unrolling Applied to Algorithms in Genetic Linkage Analysis." Feb 1993.
    

21. 21.Wu, David C. "A Patient Location System." VI-A Thesis. Dec 1993.
    

22. 22.Yeh, Susan S. "Constructing Decision Models for Diabetes Using Clinical Data." May 1994.
    

23. 23.Sharma, Ashish. "Loan Pricing Model: Design and Implementation." May 1996.
    

24. 24.Le, Phuc V. (Phillip). "A Clinical Trial of TrenDx: An Automated Trend-Detection Program." Sep 1996.
    

25. 25.Schindler, Jiri. "Learning the Structure and Content of an Electronic Medical Record System." May 1997.
    

26. 26.Sweeney, Latanya. "Sprees: a Finite-State Orthographic Learning System that Recognizes and Generates Phonologically Similar Spellings." May 1997.
    

27. 27.Zhao, Ruilin. "A Model-Based Expert System for Interpretation of Hemodynamic Data from ICU Patients." Co-supervised with Roger Mark. Jun 1997.
    

28. 28.Goyal, Manish. "A Visual Method for Input of Uncertain Time-Oriented Data." Aug 1997.
    

29. 29.Nigrin, Daniel J. "Improved Access to Large Medical Databases for Clinical Research and Quality Improvement." Co-supervised with Isaac S. Kohane. Feb 1999.
    

30. 30.Miller, Jason C. "A Genetic Risk System for Genetic Counselors." May 1999.
    

31. 31.Curry, Catherine. "An Adaptive Expert System for Therapeutic Control of Malaria." Co-supervised with Mojdeh Mohtashemi. Aug 1999.
    

32. 32.DeSouza, Mary. "Automated Medical Trend Detection." May 2000.
    

33. 33.Lacson, Ronilda. "Knowledge Representation of Situation-Specific Clinical Practice Guidelines." Co-supervised with Aziz Boxwala. Jun 2000.
    

34. 34.Butte, Atul J. "Mutual Information Relevance Networks: Functional Genomic Clustering Using Pairwise Entropy Measures." Co-supervised with Isaac S. Kohane. Sep 2000.
    

35. 35.Koh, Waikit. "An information theoretic approach to ontology-based interest matching." Co-supervised with Lik Mui. May 2001.
    

36. 36.Nakrin, Andrew. "TagMeds — A Tool for Populating eXtensible Markup Language Documents with UMLS Concept Unique Identifiers of Current Medications." May 2001.
    

37. 37.Wu, Min. "Secure Health Information Sharing System." Co-supervised with Mojdeh Mohtashemi. May 2001.
    

38. 38.Ang, Cheewee. "A context-based personalized rating system using reputation as a basis." Co-supervised with Lik Mui. May 2001.
    

39. 39.Tanudjaja, Francisco. "Personalization of Search Engines." Co-supervised with Lik Mui. Jun 2001.
    

40. 40.Lieber, Silke C. “Privacy Enhancing Technology in Health Care by Use of Smart Cards.” Thesis at Fachhochschule Ulm. June 2001.
    

41. 41.Mani, Kartik M. "Heart at Home -- Guardian Angel for Heart Failure." Co-supervised with William J. Long, John Ankorn. Aug 2001.
    

42. 42.Bull, Steven M. "Diagnostic Process Monitoring with Temporally Uncertain Models." May 2002.
    

43. 43.Harik, Ralph. "Structural and Semantic Information Extraction." Co-supervised with Mojdeh Mohtashemi. May 2003.
    

44. 44.Zhang, Ying. "Real-Time Analysis of Physiological Data and Development of Alarm Algorithms for Patient Monitoring in the Intensive Care Unit." Aug 2003.
    

45. 45.Cody, Patrick M. "Dynamic Security for Medical Record Sharing." Aug 2003.
    

46. 46.Hastings, Joseph R. “Incremental Bayesian Segmentation for Intrusion Detection.” Co-supervised with Marco Ramoni.  Sep 2003.
    

47. 47.Cassa, Chris. "Spatial Outbreak Detection Analysis Tool: A system to create sets of semi-synthetic geo-spatial clusters." Co-supervised with Kenneth Mandl. Sep 2004.
    

48. 48.Bhooshan, Neha. "Classification of Semantic Relations from Syntactic Structures in Medical Text Using the MeSH Hierarchy." Feb 2005.
    

49. 49.Hope, Stephanie. "Personal Internetworked Notary and Guardian Supported by Distributed Data Storage." May 2005.
    

50. 50.Shu, Jennifer. “Free text phrase encoding and information extraction from medical notes.” Co-supervised with Roger Mark.  Sep 2005.
    

51. 51.Sibanda, Tawanda. "Was the Patient Cured? Understanding Semantic Categories and Their Relationships in Patient Records." Co-supervised with Ozlem Uzuner. May 2006.
    

52. 52.Hug, Caleb. "Predicting the Risk and Trajectory of Intensive Care Patients Using Outcome Models." Sep 2006.
    

53. 53.Hofmann, Matthew Robert. "Modeling Medical Devices for Plug-and-Play Interoperability." Co-supervised with William W. Weinstein, Draper Labs. May 2007.
    

54. 54.Rudin, Robert. "Making Medical Records More Resilient." Jun 2007.
    

55. 55.He, Tian. “Coreference Resolution on Entities and Events for Hospital Discharge Summaries.” Co-supervised with Ozlem Uzuner, SUNY/Albany. Aug 2007.
    

56. 56.Cuevas, Penelope H. “Visualizing the Conversation Pathways of Telephone Linked Care in a Directed Graph.” Co-supervised with Robert Friedman, Boston University. May 2009.
    

57. 57.Celi, Leo Anthony G. “Localized customized mortality prediction modeling for patients with acute renal failure admitted to the intensive care unit.” May 2009.
    

58. 58.Mishra, Rajesh. “Information Transmission in the MIMIC II Clinical Database.” System Design and Management Program, co-supervised with Roy Welsch.  May 2010.
    

59. 59.Kuan, Katherine. “Framework for Automated Heart and Lung Sound Analysis Using a Mobile Telephone Platform. Co-supervised with Gari Clifford.  July 2010.
    

60. 60.Ryan, Russel. “A System for Semi-supervised Relation Extraction in Medical Language.” Co-supervised with Özlem Uzuner. Jan 2011.
    

61. 61.Lai, Jeremy. “Concept Extraction for Disability Insurance Payment Evaluation.” Co-supervised with William J. Long.  June 2011.
    

62. 62.Tafvizi, Arya. “A De-identifier For Electronic Medical Records Based On A Heterogeneous Feature Set.” Co-supervised with Özlem Uzuner. Aug 2011.
    

63. 63.Kshetri, Kanak. “Modeling Patient States in Intensive Care Patients.” Co-supervised with Rohit Joshi.  Sep 2011.
    

64. 64.Gur, Burkay. Improving Speech Recognition Accuracy for Clinical Conversations. May 2012.
    

65. 65.Bodnari, Andreea. A Medication Extraction Framework for Electronic Health Records.  Co-supervised with Özlem Uzuner. Sep. 2012.
    

66. 66.Misquitta, Donald. Early Prediction of Antibiotics in Intensive Care Unit Patients. Master of Medical Science, Harvard Medical School, May 2013.
    

67. 67.Chasin, Rachel.  Word Sense Disambiguation in Clinical Text. Co-supervised with Anna Rumshisky.  May 2013.
    

68. 68.Ooi, Boon Teik.  Probabilistic Modeling of Kidney Dynamics for Renal Failure Prediction.  Co-supervised with William J. Long, Sep 2013.
    

69. 69.Chen, Michelle W.  Comparison of Natural Language Processing Algorithms for Medical Texts. June 2015.
    

70. 70.Pillai, Divya. Clinical Trend Discovery and Analysis of Taiwanese Health Insurance Claims Data.  May 2016.
    

71. 71.Chamberlain, Daniel. “Design of a Mobile Kit for Diagnosis and Screening of Pulmonary Disease.” IDSS, co-supervised with Rich Fletcher. Feb 2017.
    

72. 72.Suresh, Harini. The Use of Autoencoders for Discovering Patient Phenotypes. May 2017.
    

73. 73.Sundaresan, Tejas. Sequential Modeling and Prediction of Mortality in Patients in the ICU. May 2017.
    

74. 74.Girkar, Uma. Using Deep Learning to Improve Patient Selection for Transcatheter Aortic Valve Replacement (TAVR) Therapy. Expected Aug 2018.
    

S.B. Theses & Advanced Undergraduate Projects

1. 1.Cooper, Greg F. "MTQ, A Medically Oriented Time Series Query Language." May 1977.
   

2. 2.Conklin, Bill. "The design and implementation of a pharmacy billing system for a 300-bed hospital." May 1978.
   

3. 3.Halbert, David C. "A LISP Debugger for Display Terminals." May 1978.
   

4. 4.Russ, Tom. "Design of Drug Administration Protocols for Cancer Therapy." May 1980.
   

5. 5.Schmick, Jonathan. "Clarifying and Defining Operating Characteristics of a Differential Diagnosis Program." May 1981.
   

6. 6.Wellman, Michael P. "A System to Help Physicians Evaluate Evidence Using Bayesian Revision." May 1983.
   

7. 7.Alfonso, Leola A. "Protocol Analysis Applied to Medical Problem Solving." Sep 1984.
   

8. 8.Pachura, David W. "A Re-Implementation of the ABEL Expert Knowledge Base." Sep 1985.
   

9. 9.Sullivan, Tom. "A Concurrent PASCAL Implementation." May 1989.
   

10. 10.Stewart, William P. "LINK: A Representation of Gene Linkage in Common Lisp." May 1991.
    

11. 11.Yampratoom, Ed. "Automatic Layout for Pedigree Diagrams." May 1991.
    

12. 12.Wu, David C. "An Object-Oriented Event-Driven Measurement Architecture." May 1993.
    

13. 13.Sun, Jennifer Y. "Probabilistic Risk Assessment of Breast Cancer." May 1994.
    

14. 14.Lui, Jervis. "Development of a Pedigree Analysis Tool for Genetic Counselors." May 1998.
    

15. 15.Block, Brad. "A Unifying Parameterized Abstraction for Segmented Web Application Creation." May 2001.
    

16. 16.Khilnani, Reshma. "Clustering of News Articles from Multiple Web Sources." May 2003.
    

17. 17.Enuha, Uche. "Translating Chemical Terms into Spanish." Joint project with Rocco Pigneri. May 2005.
    

18. 18.Pigneri, Rocco. "Translating Chemical Terms into Spanish." Joint project with Uche Enuha. May 2005.
    

19. 19.Bharghava, Neha. "AIDS Patient Case-tracking System: Discussion of the Web Interface." Part of a multi-student project to develop tools for primary AIDS care in Zambia. May 2005.
    

20. 20.Callahan, Tyler. "A PDA-based Patient Tracking System." Part of Zambia project. May 2005.
    

21. 21.Eng, Christy. "Patient Case Tracking System: Web Server Development." Part of Zambia project. May 2005.
    

22. 22.Gupta, Rohit. "DTM: Casetracking." Part of Zambia project. May 2005.
    

23. 23.Moah, Aye. "Modular Patient Tracking System." Part of Zambia project. May 2005.
    

24. 24.Powers, Alvin Carter, III. "Patient Case Tracking: A GUI Application for a Data Collection and Data Management System for AIDS ßPatients in Zambia." Part of Zambia project. May 2005.
    

25. 25.Wang, Qian. "AIDS Patient Tracking System." Part of Zambia project. May 2005.
    

26. 26.Schmeckpeper, Benjamin A. "Centralized Track Results." May 2005.
    

27. 27.Mazen, Nadeem A. “High Usability Software for Outpatient Data-Collection and Health Education.” May 2006.
    

28. 28.Baptista, Silvia. "Integrating Medical Text Extraction Tools." Jan 2008.
    

29. 29.Zhang, Xiaoran. "Medical Question Answering System." Co-supervised with Ozlem Uzuner. May 2008.
    

30. 30.Kim, Wonsik. "A System For Free Text Medical Document Analysis: A Parsing, Clustering, and Browsing System." May 2008.
    

31. 31.Yang, Christine. "A Usable Personal Health Record for Senior Citizens." Aug 2008.
    

32. 32.Rothberg, Alex. “Interfacing Dragon Naturally Speaking with a Lisp Text Processing System.” May 2009.
    

33. 33.Awad, Hiba. “Using Bayesian Modeling to Understand the Dependency Structure between Epigenetics and Gene Expression.” May 2009.
    

34. 34.Pugh, Kendra. “An Expert-Based System for Massachusetts Emergency Medical Services—(EMS)2.” May 2009.
    

35. 35.Bomke, Melanie. “The Neuron Simulation Game.” May 2009.
    

36. 36.Gens, Robert. “The Neuron Simulation Game.” Joint with M. Bomke. May 2009.
    

37. 37.Bracht, Erich. “CSAIL Publications Website.” May 2010.
    

38. 38.Driscoll, Joseph. “Improving Outpatient Physical Therapy.” May 2014.
    

39. 39.Fu, Sherry. “Designing Data Tools for the Community Health Workers of Association Espoir pour Demain in Kara, Togo.” May 2014.
    

40. 40.Wu, Yi. “Diurnal Variations in Blood Glucose Concentrations in ICU Patients.” With Ying Zhang.  May 2014.
    

41. 41.Gheorghe, Cosmin. “Coreference Resolution through Word Alignment.” With Andreea Bodnari. May 2014.
    

42. 42.Merlino, Matthew. “PLATE (Poly-Lingual Architecture for Text Engineering) Extensions.” With Yuan Luo. May 2014.
    

Post-Doctoral Fellows, Visitors and Affiliates

1. 1.Goldberger, Harold. Visiting Scientist, grad student, early-1980‘s.
   

2. 2.Senyk, Oksana. Postdoc.
   

3. 3.Halamka, John. Medical Informatics Fellow, 1996-8.
   

4. 4.Mandl, Kenneth. Medical Informatics Fellow.
   

5. 5.Cao, Cungen. Postdoc, 1998-9.
   

6. 6.Fraser, Hamish. Postdoc.
   

7. 7.Mohtashemi, Mojdeh. Postdoc.
   

8. 8.Uzuner, Özlem. Postdoc, 2005-6.
   

9. 9.Doyle, Jon. Research Affiliate.
   

10. 10.Alterovitz, Gil. Research Affiliate.
    

11. 11.McGeachie, Michael. Research Affiliate.
    

12. 12.Kohane, Isaac. Research Affiliate.
    

13. 13.Lacson, Ronilda. Research Affiliate.
    

14. 14.Adlassnig, Peter. Visitor, Sep 2008.
    

15. 15.Klann, Jeff.
    

16. 16.Joshi, Rohit. Postdoc 2010-2013
    

17. 17.Berkoben, Keith, Research Assistant
    

18. 18.Rumshisky, Anna, Postdoc 2011-12.
    

19. 19.Williams, Joshua, MSRP summer intern, 2015.
    

20. 20.Hassanpour, Saeed, Assistant Professor of Biomedical Data Science, Geisel School of Medicine at Dartmouth. Mentorship.