Andreas R Pfenning
Nucleosomes

Publications

  1. Madabhushi R*, Gao F*, Pfenning AR, Pan L, Yamakawa S, Seo J, Rueda R, Phan TX, YamawakaH, Pao P-C, Stott RT, Gjoneska E, Nott A, Cho S, Kellis M, Tsai L-H. Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes. (2015) Cell. PMID: 26052046
  2. Gjoneska E*, Pfenning AR*, Kundaje A, Tsai L-H, Kellis M. Conserved epigenomic signals in mice and human reveal immune basis of Alzheimer's disease. (2015) Nature. PMID: 25693568
  3. Kundaje A, Meuleman W, Ernst J, et al. (Author #21/93, equal contribution with first author in integrative analysis) Integrative analysis of 111 reference human epigenomes. (2015) Nature. PMID: 25693563
  4. Pfenning, AR, Hara E, Whitney O, Rivas M, Roulhac P, Ganapathy G, Hartemink AJ, Jarvis ED. Convergent transcriptional specializations in the brains of humans and song learning birds. (2014) Science. PMID: 25504733
  5. Whitney O*, Pfenning AR*, Howard JT, Blatti CA, Lie F, Ward JM, Wang R, Kellis M, Mukherjee S, Sinha S, Hartemink AJ, West AE, Jarvis ED. Core and region enriched networks of behaviorally regulated genes and the singing genome. (2014) Science. PMID: 25504732
  6. Zhang G, Li C, Li Q, Li B, et al. (Author #51/105). Comparative Genomics Reveal Insights into Avian Genome Evolution and Adaptation. (2014) Science. PMID: 25504712
  7. Chen CC, Winkler CM, Pfenning AR, Jarvis ED. Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities. (2013) J Comp Neurol. PMID: 23818174
  8. Jarvis ED, Yu J, Rivas MV, Horita H, Feenders G, Whitney O, Jarvis SC, Jarvis ER, Kubikova L, Puck AE, Siang-Bakshi C, Martin S, McElroy M, Hara E, Howard J, Pfenning A, Mouritsen H, Chen CC, Wada K. Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns. (2013) J Comp Neurol. PMID: 23818122
  9. Liedtke W, McKinley MJ, Walker LL*, Zhang H*, Pfenning AR*, Drago J, Hochendoner SJ, Hilton DL, Lawrence AJ, Denton DA. Relation of addiction genes to hypothalamic gene changes subserving genesis and gratification of a classic instinct, sodium appetite. (2011) Proc Natl Acad Sci. PMID: 21746918
  10. Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE. Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. (2010) PLoS One. PMID: 20523734
  11. Pfenning AR. Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference. Review. (2010) The Quarterly Review of Biology.
  12. Warren WC, Clayton DF, et al. (Author #36/80). The genome of a songbird. (2010) Nature. PMID: 20360741
  13. Pfenning AR, Schwartz R, Barth AL. A comparative genomics approach to identifying the plasticity transcriptome. (2007) BMC Neurosci. PMID: 17355637
* Equal contribution