Jonas Mueller jonasmueller á csail.mit.edu Chief Scientist @ Cleanlab Hiring interns and senior software or ML engineers! Please email me.

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About Me: I am Chief Scientist and Co-Founder at Cleanlab, building tools for data-centric AI. Previously, I worked on new ML algorithms at Amazon Web Services and Microsoft Research. Before that, I completed my Ph.D. at the MIT Computer Science & Artificial Intelligence Lab.

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Publications
[Full list at Google Scholar]


Flexible Model Aggregation for Quantile Regression
R Fakoor, T Kim, J Mueller, A Smola, R Tibshirani
Journal of Machine Learning Research (JMLR), 2023


Adaptive Interest for Emphatic Reinforcement Learning
M Klissarov, R Fakoor, J Mueller, K Asadi, T Kim, A Smola
Advances in Neural Information Processing Systems (NeurIPS), 2022
[Featured as Spotlight Presentation at ICML DARL Workshop]


Does your graph need a confidence boost? Convergent boosted smoothing on graphs with tabular node features
J Chen, J Mueller, V Ioannidis, S Adeshina, Y Wang, T Goldstein, D Wipf
International Conference on Learning Representations (ICLR), 2022
[Featured as Spotlight Presentation]


Deep Learning for the Partially Linear Cox Model
Q Zhong, J Mueller, J Wang
Annals of Statistics, 2022


Detecting Label Errors in Token Classification Data
WC Wang, J Mueller
NeurIPS 2022 Workshop on Interactive Learning for Natural Language Processing (InterNLP), 2022
[Code to run method] [Code to reproduce results] [Blog Post]


CROWDLAB: Supervised learning to infer consensus labels and quality scores for data with multiple annotators
HW Goh, U Tkachenko, J Mueller
NeurIPS 2022 Human in the Loop Learning Workshop, 2022
[Code to run method] [Code to reproduce results] [Blog Post]


Model-Agnostic Label Quality Scoring to Detect Real-World Label Errors
J Kuan, J Mueller
ICML DataPerf Workshop, 2022
[Code]


Back to the Basics: Revisiting Out-of-Distribution Detection Baselines
J Kuan, J Mueller
ICML Workshop on Principles of Distribution Shift, 2022
[Code]


ResNeSt: Split-Attention Networks
H Zhang, C Wu, Z Zhang, Y Zhu, Z Zhang, H Lin, Y Sun, T He, J Mueller, R Manmatha, M Li, A Smola
IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), 2022
[Featured in Synced, Analytics India Magazine, Pytorch Image Models] [Code]


Towards Automated Distillation: A Systematic Study of Knowledge Distillation in Natural Language Processing
H He, X Shi, J Mueller, S Zha, M Li, G Karypis
International Conference on Automated Machine Learning: Late-Breaking Workshop, 2022


Pervasive Label Errors in Test Sets Destabilize Machine Learning Benchmarks
C Northcutt, A Athalye, J Mueller
Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks, 2021
[Featured as Oral Presentation and in Wired, VentureBeat, MIT Technology Review, CNN News18] [Webpage] [Code] [Blog]


Benchmarking Multimodal AutoML for Tabular Data with Text Fields
X Shi^*, J Mueller^*, N Erickson, M Li, A Smola
Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks, 2021
[Featured as Contributed Talk at ICML Workshop on Automated Machine Learning] [Code] [Benchmark Datasets]


Overinterpretation reveals image classification model pathologies
B Carter, S Jain, J Mueller, D Gifford
Advances in Neural Information Processing Systems (NeurIPS), 2021
[Featured in TechXplore, VentureBeat, World Economic Forum, NY Tech Media] [Lecture Notes] [Code]


Deep Extended Hazard Models for Survival Analysis
Q Zhong, J Mueller, J Wang
Advances in Neural Information Processing Systems (NeurIPS), 2021


Continuous Doubly Constrained Batch Reinforcement Learning
R Fakoor, J Mueller, K Asadi, P Chaudhari, A Smola
Advances in Neural Information Processing Systems (NeurIPS), 2021
[Code]


Robust Reinforcement Learning for Shifting Dynamics During Deployment
S Stanton, R Fakoor, J Mueller, A Wilson, A Smola
NeurIPS Workshop on Safe and Robust Control of Uncertain Systems, 2021


Deep Learning for Functional Data Analysis with Adaptive Basis Layers
J Yao, J Mueller, J Wang
International Conference on Machine Learning (ICML), 2021
[Code]


Fast, Accurate, and Simple Models for Tabular Data via Augmented Distillation
R Fakoor^*, J Mueller^*, P Chaudhari, A Smola
Advances in Neural Information Processing Systems (NeurIPS), 2020
[Lecture Notes] [Code]


AutoGluon-Tabular: Robust and Accurate AutoML for Structured Data
N Erickson^*, J Mueller^*, A Shirkov, H Zhang, P Larroy, M Li, A Smola
ICML Workshop on Automated Machine Learning, 2020
[Code] [Tutorial] [Featured in VentureBeat, InfoWorld, SiliconAngle, Synced, SD Times, Forbes]


TraDE: Transformers for Density Estimation
R Fakoor, P Chaudhari, J Mueller, A Smola
ICML Workshop on Invertible Neural Networks, Normalizing Flows, and Explicit Likelihood Models, 2020


Educating Text Autoencoders: Latent Representation Guidance via Denoising
T Shen, J Mueller, R Barzilay, T Jaakkola
International Conference on Machine Learning (ICML), 2020
[Slides] [Code]


Maximizing Overall Diversity for Improved Uncertainty Estimates in Deep Ensembles
S Jain^*, G Liu^*, J Mueller, D Gifford
Proceedings of the 34th AAAI Conference on Artificial Intelligence (AAAI), 2020


Antibody Complementarity Determining Region Design Using High-Capacity Machine Learning
G Liu^*, H Zeng^*, J Mueller, B Carter, Z Wang, J Schilz, G Horny, M Birnbaum, S Ewert, D Gifford
Bioinformatics, 2020


Low-Rank Bandit Methods for High-Dimensional Dynamic Pricing
J Mueller, V Syrgkanis, M Taddy
Advances in Neural Information Processing Systems (NeurIPS), 2019
[Code]


Recognizing Variables from their Data via Deep Embeddings of Distributions
J Mueller, A Smola
IEEE International Conference on Data Mining (ICDM), 2019
[Slides]


IMaT: Unsupervised Text Attribute Transfer via Iterative Matching and Translation
Z Jin^*, D Jin^*, J Mueller, N Matthews, E Santus
Empirical Methods in Natural Language Processing (EMNLP), 2019
[Data]


What made you do this? Understanding black-box decisions with sufficient input subsets
B Carter^*, J Mueller^*, S Jain, D Gifford
Artificial Intelligence and Statistics (AISTATS), 2019
[Featured as Contributed Talk at NIPS Workshop on Interpretability and Robustness] [Slides] [Lecture Notes] [Code]


A peninsular structure coordinates asynchronous differentiation with morphogenesis to generate pancreatic islets
N Sharon^*, R Chawla^*, J Mueller, J Vanderhooft, J Whitehorn, B Rosenthal, M Gurtler, R Estanboulieh, D Shvartsman, D Gifford, C Trapnell, D Melton
Cell, 2019
[Featured as a Research Highlight in Nature Reviews Endocrinology] [Journal Version] [Data] [Video]


Wnt Signaling Separates the Progenitor and Endocrine Compartments during Pancreas Development
N Sharon, J Vanderhooft, J Straubhaar, J Mueller, R Chawla, Q Zhou, E Engquist, C Trapnell, D Gifford, D Melton
Cell Reports, 2019
[Part of research effort that led to the first cure for Type 1 Diabetes] [Data]


Modeling Persistent Trends in Distributions
J Mueller, T Jaakkola, D Gifford
Journal of the American Statistical Association (JASA), 2018
[Journal Version] [Code]


Sequence to Better Sequence: Continuous Revision of Combinatorial Structures
J Mueller, D Gifford, T Jaakkola
International Conference on Machine Learning (ICML), 2017
[Slides] [Code]


Learning Optimal Interventions
J Mueller, D Reshef, G Du, T Jaakkola
Artificial Intelligence and Statistics (AISTATS), 2017
[Featured as Contributed Talk at NIPS Workshop on Bayesian Optimization] [Slides] [Code]


Siamese Recurrent Architectures for Learning Sentence Similarity
J Mueller, A Thyagarajan
Proceedings of the 30th AAAI Conference on Artificial Intelligence (AAAI), 2016
[Lecture Notes] [Code]


Principal Differences Analysis: Interpretable Characterization of Differences between Distributions
J Mueller and T Jaakkola
Advances in Neural Information Processing Systems (NIPS), 2015
[Slides] [Code]


General Triallelic Frequency Spectrum Under Demographic Models with Variable Population Size
P Jenkins, J Mueller, Y Song
Genetics, 2014
[Featured as a Research Highlight in Nature Reviews Genetics]


Flexible models for understanding and optimizing complex populations
J Mueller
Ph.D. Thesis, MIT Department of Electrical Engineering and Computer Science, 2018


Modeling temporally-regulated effects on distributions
J Mueller
Masters Thesis, MIT Department of Electrical Engineering and Computer Science, 2015


Statistical inference of recombination-inducing genic features in Drosophila melanogaster
J Mueller
Honors Thesis, UC Berkeley Department of Statistics, 2013

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^* Equal Contribution